RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 FAM3BP58499 235 aaPredicted RBP11.97□□□□□ -0.49
TRIM39-209ENST00000428728 BAXQ07812 192 aa11.97□□□□□ -0.49
TRIM39-209ENST00000428728 ZNF493Q6ZR52 646 aa11.97□□□□□ -0.49
TRIM39-209ENST00000428728 Q6ZRG5 221 aa11.97□□□□□ -0.49
TRIM39-209ENST00000428728 ZNF575Q86XF7 245 aa11.97□□□□□ -0.49
TRIM39-209ENST00000428728 RNF141Q8WVD5 230 aa11.97□□□□□ -0.49
TRIM39-209ENST00000428728 C11orf1Q9H5F2 150 aa11.97□□□□□ -0.49
TRIM39-209ENST00000428728 KIAA1109Q2LD37 5005 aa11.97□□□□□ -0.49
TRIM39-209ENST00000428728 DNAH17Q9UFH2 4485 aa11.96□□□□□ -0.49
TRIM39-209ENST00000428728 PVALBP20472 110 aaPredicted RBP11.96□□□□□ -0.49
TRIM39-209ENST00000428728 C12orf45Q8N5I9 185 aaPredicted RBP11.96□□□□□ -0.49
TRIM39-209ENST00000428728 OR1L4Q8NGR5 311 aa11.96□□□□□ -0.49
TRIM39-209ENST00000428728 SAT2Q96F10 170 aaPredicted RBP11.96□□□□□ -0.49
TRIM39-209ENST00000428728 C2orf50Q96LR7 162 aa11.96□□□□□ -0.49
TRIM39-209ENST00000428728 C20orf144Q9BQM9 153 aa11.96□□□□□ -0.49
TRIM39-209ENST00000428728 DNAJC4Q9NNZ3 241 aa11.96□□□□□ -0.49
TRIM39-209ENST00000428728 WDR83OSQ9Y284 106 aa11.96□□□□□ -0.49
TRIM39-209ENST00000428728 IGSF23A1L1A6 192 aa11.95□□□□□ -0.5
TRIM39-209ENST00000428728 CCL18P55774 89 aa11.95□□□□□ -0.5
TRIM39-209ENST00000428728 CLINT1Q14677 625 aa11.95□□□□□ -0.5
TRIM39-209ENST00000428728 ZNRF2Q8NHG8 242 aa11.95□□□□□ -0.5
TRIM39-209ENST00000428728 PFDN5Q99471 154 aa11.95□□□□□ -0.5
TRIM39-209ENST00000428728 TRAV12-3A0A0B4J271 114 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 NBDYA0A0U1RRE5 68 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 H2AFB2P0C5Z0 115 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 RAB32Q13637 225 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 STX12Q86Y82 276 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 CCDC28AQ8IWP9 274 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 SLC39A9Q9NUM3 307 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 ZNF586Q9NXT0 402 aa11.94□□□□□ -0.5
TRIM39-209ENST00000428728 GAGE12BA1L429 117 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 SNURFLB1AK76 121 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 NPIPB6E9PJ23 425 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 GAGE7O76087 117 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 GAGE12FP0CL80 117 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 GAGE12GP0CL81 117 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 GAGE12IP0CL82 117 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 CT45A10P0DMU9 189 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 FGF7P21781 194 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 LEPP41159 167 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 SULT1A1P50225 295 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 OR5I1Q13606 314 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 GUK1Q16774 197 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 VWC2Q2TAL6 325 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 LYRM2Q9NU23 88 aaPredicted RBP11.93□□□□□ -0.5
TRIM39-209ENST00000428728 LINC00588Q9Y4M8 146 aa11.93□□□□□ -0.5
TRIM39-209ENST00000428728 RLN2P04090 185 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 RPL29P47914 159 aaKnown RBP11.92□□□□□ -0.5
TRIM39-209ENST00000428728 HBG1P69891 147 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 HBG2P69892 147 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 TNP2Q05952 138 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 SSX7Q7RTT5 188 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 TMEM252Q8N6L7 170 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 CCDC32Q9BV29 185 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 GPN1Q9HCN4 374 aaPredicted RBP11.92□□□□□ -0.5
TRIM39-209ENST00000428728 PKD1P98161 4303 aa11.92□□□□□ -0.5
TRIM39-209ENST00000428728 TRAV26-1A0A087WT03 109 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 A0A0J9YY99 117 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 FAM240BA0A1B0GVZ2 78 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 M0R3E3 92 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 S100A11P31949 105 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 C6orf223Q8N319 242 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 LINC00612Q8N6U2 182 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 GNPNAT1Q96EK6 184 aaPredicted RBP11.91□□□□□ -0.5
TRIM39-209ENST00000428728 ODF3Q96PU9 254 aa11.91□□□□□ -0.5
TRIM39-209ENST00000428728 ZNF253O75346 499 aa11.9□□□□□ -0.5
TRIM39-209ENST00000428728 PYYP10082 97 aa11.9□□□□□ -0.5
TRIM39-209ENST00000428728 M6PRP20645 277 aa11.9□□□□□ -0.5
TRIM39-209ENST00000428728 HOXA5P20719 270 aa11.9□□□□□ -0.5
TRIM39-209ENST00000428728 ERCC8Q13216 396 aa11.9□□□□□ -0.5
TRIM39-209ENST00000428728 NDUFA13Q9P0J0 144 aa11.9□□□□□ -0.5
TRIM39-209ENST00000428728 TRBV19A0A075B6N1 114 aa11.89□□□□□ -0.51
TRIM39-209ENST00000428728 IL15RAQ13261 267 aa11.89□□□□□ -0.51
TRIM39-209ENST00000428728 GCSAMLQ5JQS6 135 aa11.89□□□□□ -0.51
TRIM39-209ENST00000428728 BLNKQ8WV28 456 aa11.89□□□□□ -0.51
TRIM39-209ENST00000428728 MRPL53Q96EL3 112 aaKnown RBP11.89□□□□□ -0.51
TRIM39-209ENST00000428728 PYGO2Q9BRQ0 406 aa11.89□□□□□ -0.51
TRIM39-209ENST00000428728 TMPRSS5Q9H3S3 457 aa11.89□□□□□ -0.51
TRIM39-209ENST00000428728 C7orf71A4D174 169 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 NDUFB4O95168 129 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 BTN1A1Q13410 526 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 MZT2BQ6NZ67 158 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 Q6ZTI0 123 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 EXOC3-AS1Q8N2X6 119 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 THAP6Q8TBB0 222 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 RXFP4Q8TDU9 374 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 NPCDR1Q9BY65 106 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 TMEM14CQ9P0S9 112 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 TIMM9Q9Y5J7 89 aa11.88□□□□□ -0.51
TRIM39-209ENST00000428728 SLC25A5P05141 298 aaKnown RBP11.87□□□□□ -0.51
TRIM39-209ENST00000428728 HIST1H1EP10412 219 aaKnown RBP11.87□□□□□ -0.51
TRIM39-209ENST00000428728 ATP6V1FQ16864 119 aa11.87□□□□□ -0.51
TRIM39-209ENST00000428728 GSN-AS1Q9NRJ2 163 aa11.87□□□□□ -0.51
TRIM39-209ENST00000428728 IGKV2-40A0A087WW87 121 aaPredicted RBP11.86□□□□□ -0.51
TRIM39-209ENST00000428728 C16orf90A8MZG2 172 aa11.86□□□□□ -0.51
TRIM39-209ENST00000428728 MPDU1O75352 247 aa11.86□□□□□ -0.51
TRIM39-209ENST00000428728 SIX6O95475 246 aa11.86□□□□□ -0.51
TRIM39-209ENST00000428728 IGKV2D-40P01614 121 aaPredicted RBP11.86□□□□□ -0.51
TRIM39-209ENST00000428728 NHLH2Q02577 135 aa11.86□□□□□ -0.51
TRIM39-209ENST00000428728 CD300CQ08708 224 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms