RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 F6UB75 175 aa10.59□□□□□ -0.71
SPG11-202ENST00000427534 IGHG3P01860 377 aa10.59□□□□□ -0.71
SPG11-202ENST00000427534 NUP35Q8NFH5 326 aa10.59□□□□□ -0.71
SPG11-202ENST00000427534 DKK4Q9UBT3 224 aa10.59□□□□□ -0.71
SPG11-202ENST00000427534 ORAOV1Q8WV07 137 aa10.58□□□□□ -0.71
SPG11-202ENST00000427534 TRBV6-6A0A0A6YYG2 114 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 ITGB1BP1O14713 200 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 AGMATQ9BSE5 352 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 CLDN16Q9Y5I7 305 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 CXCL1P09341 107 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 WT1P19544 449 aaPredicted RBP10.58□□□□□ -0.72
SPG11-202ENST00000427534 C1QTNF4Q9BXJ3 329 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 A0A087X0K7 114 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 CD5P06127 495 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 MORN3Q6PF18 240 aaPredicted RBP10.58□□□□□ -0.72
SPG11-202ENST00000427534 MS4A6AQ9H2W1 248 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 NOP10Q9NPE3 64 aaKnown RBP10.58□□□□□ -0.72
SPG11-202ENST00000427534 VWA8A3KMH1 1905 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 TMEM242Q9NWH2 141 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 ERG28Q9UKR5 140 aa10.58□□□□□ -0.72
SPG11-202ENST00000427534 FNDC1Q4ZHG4 1894 aaPredicted RBP10.57□□□□□ -0.72
SPG11-202ENST00000427534 SPRNQ5BIV9 151 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 NKAPP1Q8N9T2 125 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 TMEM126AQ9H061 195 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 ANGP03950 147 aaKnown RBP10.57□□□□□ -0.72
SPG11-202ENST00000427534 STAG3L3P0CL85 134 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 PMVKQ15126 192 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 LY6G6EA0A0G2JKS1 128 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 SLURP1P55000 103 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 U3KQA8 63 aa10.57□□□□□ -0.72
SPG11-202ENST00000427534 LOC105371267A0A1B0GV96 52 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 EREGO14944 169 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 MMP23AO75900 390 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 CNOT1A5YKK6 2376 aaKnown RBP10.56□□□□□ -0.72
SPG11-202ENST00000427534 CMC4P56277 68 aaPredicted RBP10.56□□□□□ -0.72
SPG11-202ENST00000427534 RASL10AQ92737 203 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 TRGV9Q99603 122 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 TMEM14EPQ6UXP3 125 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 C9orf139Q6ZV77 190 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 PRB2P02812 416 aaPredicted RBP10.56□□□□□ -0.72
SPG11-202ENST00000427534 HLA-DMBP28068 263 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 RASL11AQ6T310 242 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 GSN-AS1Q9NRJ2 163 aa10.56□□□□□ -0.72
SPG11-202ENST00000427534 IGHV4-38-2P0DP08 117 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 Q6ZR03 302 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.55□□□□□ -0.723e-6■■■■□ 25.4
SPG11-202ENST00000427534 MTURNQ8N3F0 131 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 RLFQ13129 1914 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 USF3Q68DE3 2245 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 NDUFS5O43920 106 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 RNASE2P10153 161 aaKnown RBP10.55□□□□□ -0.72
SPG11-202ENST00000427534 TRAV1-1A0A0B4J248 108 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 ESDP10768 282 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 VWC2Q2TAL6 325 aa10.55□□□□□ -0.72
SPG11-202ENST00000427534 APOC4P55056 127 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 SRSF2Q01130 221 aaKnown RBP10.54□□□□□ -0.72
SPG11-202ENST00000427534 GAGE2AQ6NT46 116 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 TIMM21Q9BVV7 248 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 LIME1Q9H400 295 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 IGHV4-30-2A0A087WSY4 118 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 LEPROTO15243 131 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BKO60814 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 IGHV3-30P01768 117 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 IGHV3-33P01772 117 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BJP06899 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 IGHV3-30-3P0DP02 117 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 IGHV3-30-5P0DP03 117 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BOP23527 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BBP33778 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BDP58876 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BCP62807 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 GUSBP1Q15486 140 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST2H2BEQ16778 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.54□□□□□ -0.72
SPG11-202ENST00000427534 Q6ZS49 121 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BHQ93079 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BNQ99877 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 HIST1H2BMQ99879 126 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 RPL18AQ02543 176 aaKnown RBP10.54□□□□□ -0.72
SPG11-202ENST00000427534 PRSS57Q6UWY2 283 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 GTF3C1Q12789 2109 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 ZFP36P26651 326 aaKnown RBP10.54□□□□□ -0.72
SPG11-202ENST00000427534 Q6ZRM9 215 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 RNF5Q99942 180 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 TP53TG1Q9Y2A0 90 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 C22orf46C9J442 243 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 VCYO14598 125 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 IGLV10-54A0A075B6I4 117 aa10.54□□□□□ -0.72
SPG11-202ENST00000427534 XCL1P47992 114 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 OCIAD2Q56VL3 154 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 KIAA1671Q9BY89 1806 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 MGAMO43451 1857 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 PRSS29PA6NIE9 313 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 C15orf62A8K5M9 175 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 UBE2BP63146 152 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 SPOCK3Q9BQ16 436 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 TRBV25-1A0A075B6N4 114 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 A0A1B0GW64 132 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 NDUFS8O00217 210 aa10.53□□□□□ -0.72
SPG11-202ENST00000427534 GNB1LQ9BYB4 327 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms