RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 TRGC1P0CF51 173 aa20.28■□□□□ 0.84
LDB1-202ENST00000425280 FOXE3Q13461 319 aa20.28■□□□□ 0.84
LDB1-202ENST00000425280 GLMPQ8WWB7 406 aa20.28■□□□□ 0.84
LDB1-202ENST00000425280 ZFP30Q9Y2G7 519 aa20.28■□□□□ 0.84
LDB1-202ENST00000425280 C19orf71A6NCJ1 209 aa20.27■□□□□ 0.84
LDB1-202ENST00000425280 CHEK1O14757 476 aa20.27■□□□□ 0.84
LDB1-202ENST00000425280 ELANEP08246 267 aa20.27■□□□□ 0.84
LDB1-202ENST00000425280 TCL1AP56279 114 aa20.27■□□□□ 0.84
LDB1-202ENST00000425280 ACTL10Q5JWF8 245 aa20.27■□□□□ 0.84
LDB1-202ENST00000425280 GRAMD2BQ96HH9 432 aa20.27■□□□□ 0.84
LDB1-202ENST00000425280 ASCL2Q99929 193 aa20.27■□□□□ 0.84
LDB1-202ENST00000425280 IGKV2-40A0A087WW87 121 aaPredicted RBP20.26■□□□□ 0.83
LDB1-202ENST00000425280 IGKV2D-40P01614 121 aaPredicted RBP20.26■□□□□ 0.83
LDB1-202ENST00000425280 SLC50A1Q9BRV3 221 aa20.26■□□□□ 0.83
LDB1-202ENST00000425280 MYOZ3Q8TDC0 251 aa20.26■□□□□ 0.83
LDB1-202ENST00000425280 ZNF705FA8MVS1 300 aaPredicted RBP20.25■□□□□ 0.83
LDB1-202ENST00000425280 MEOX2P50222 304 aa20.25■□□□□ 0.83
LDB1-202ENST00000425280 LCN12Q6JVE5 192 aa20.25■□□□□ 0.83
LDB1-202ENST00000425280 RNF182Q8N6D2 247 aa20.24■□□□□ 0.83
LDB1-202ENST00000425280 ZC2HC1AQ96GY0 325 aa20.24■□□□□ 0.83
LDB1-202ENST00000425280 SONP18583 2426 aaKnown RBP20.24■□□□□ 0.83
LDB1-202ENST00000425280 TRAV8-2A0A0B4J237 113 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 FABP9Q0Z7S8 132 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 C8orf86Q6ZUL3 223 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 RNF152Q8N8N0 203 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 DNAJC9-AS1A6NH13 148 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 UBE2CO00762 179 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 NDUFA6P56556 154 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 TM4SF20Q53R12 229 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 GBGT1Q8N5D6 347 aa20.23■□□□□ 0.83
LDB1-202ENST00000425280 RPP21Q9H633 154 aaKnown RBP20.23■□□□□ 0.83
LDB1-202ENST00000425280 FASNP49327 2511 aaKnown RBP20.22■□□□□ 0.83
LDB1-202ENST00000425280 P01737 135 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 FRMD6-AS1P0C7T7 363 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 GPHB5Q86YW7 130 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 DAZAP1Q96EP5 407 aaKnown RBP20.22■□□□□ 0.83
LDB1-202ENST00000425280 TRAPPC1Q9Y5R8 145 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 HECTD1Q9ULT8 2610 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 FAM106AQ4KMX7 169 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 TSKUQ8WUA8 353 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 VGLL1Q99990 258 aa20.22■□□□□ 0.83
LDB1-202ENST00000425280 DAZ1Q9NQZ3 744 aaKnown RBP20.22■□□□□ 0.83
LDB1-202ENST00000425280 IGHV7-4-1A0A0J9YVY3 117 aa20.21■□□□□ 0.83
LDB1-202ENST00000425280 A0A1W2PS18 150 aa20.21■□□□□ 0.83
LDB1-202ENST00000425280 IZUMO1RA6ND01 250 aa20.2■□□□□ 0.82
LDB1-202ENST00000425280 SPINK4O60575 86 aa20.2■□□□□ 0.82
LDB1-202ENST00000425280 C8orf49Q96NF6 230 aa20.2■□□□□ 0.82
LDB1-202ENST00000425280 PRAC2D3DTV9 90 aa20.2■□□□□ 0.82
LDB1-202ENST00000425280 NPIPB6E9PJ23 425 aa20.2■□□□□ 0.82
LDB1-202ENST00000425280 LGALS1P09382 135 aaKnown RBP20.2■□□□□ 0.82
LDB1-202ENST00000425280 UBE2E2Q96LR5 201 aa20.2■□□□□ 0.82
LDB1-202ENST00000425280 ACANP16112 2415 aa20.19■□□□□ 0.82
LDB1-202ENST00000425280 FAM181BA6NEQ2 426 aa20.19■□□□□ 0.82
LDB1-202ENST00000425280 FBLL1A6NHQ2 334 aaKnown RBP20.19■□□□□ 0.82
LDB1-202ENST00000425280 K7EMT4 169 aa20.19■□□□□ 0.82
LDB1-202ENST00000425280 CBLN1P23435 193 aa20.19■□□□□ 0.82
LDB1-202ENST00000425280 CT83Q5H943 113 aa20.19■□□□□ 0.82
LDB1-202ENST00000425280 ESM1Q9NQ30 184 aa20.19■□□□□ 0.82
LDB1-202ENST00000425280 NEU1Q99519 415 aa20.18■□□□□ 0.82
LDB1-202ENST00000425280 RHPN1-AS1Q9BWJ2 59 aa20.18■□□□□ 0.82
LDB1-202ENST00000425280 NUP35Q8NFH5 326 aa20.18■□□□□ 0.82
LDB1-202ENST00000425280 NAT8BQ9UHF3 227 aa20.18■□□□□ 0.82
LDB1-202ENST00000425280 CRIP1P50238 77 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 MRPL53Q96EL3 112 aaKnown RBP20.17■□□□□ 0.82
LDB1-202ENST00000425280 PRR25Q96S07 402 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 SMPXQ9UHP9 88 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 HOXA5P20719 270 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 RPL19P84098 196 aaKnown RBP20.17■□□□□ 0.82
LDB1-202ENST00000425280 SMUG1Q53HV7 270 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 KLHDC1Q8N7A1 406 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 Q8TAT8 98 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 C16orf92Q96LL3 132 aa20.17■□□□□ 0.82
LDB1-202ENST00000425280 A8MWL6 223 aa20.16■□□□□ 0.82
LDB1-202ENST00000425280 EDN2P20800 178 aa20.16■□□□□ 0.82
LDB1-202ENST00000425280 SAPCD1Q5SSQ6 148 aa20.16■□□□□ 0.82
LDB1-202ENST00000425280 MRPL54Q6P161 138 aaKnown RBP20.16■□□□□ 0.82
LDB1-202ENST00000425280 Q6ZSV7 163 aa20.16■□□□□ 0.82
LDB1-202ENST00000425280 OR4B1Q8NGF8 309 aa20.16■□□□□ 0.82
LDB1-202ENST00000425280 RBAKDNA6NC62 111 aa20.15■□□□□ 0.82
LDB1-202ENST00000425280 HIGD1CA8MV81 97 aa20.15■□□□□ 0.82
LDB1-202ENST00000425280 ERCC8Q13216 396 aa20.15■□□□□ 0.82
LDB1-202ENST00000425280 COX8CQ7Z4L0 72 aa20.15■□□□□ 0.82
LDB1-202ENST00000425280 UFC1Q9Y3C8 167 aa20.15■□□□□ 0.82
LDB1-202ENST00000425280 AKR1D1P51857 326 aa20.15■□□□□ 0.82
LDB1-202ENST00000425280 GNB1LQ9BYB4 327 aa20.15■□□□□ 0.82
LDB1-202ENST00000425280 IGHV4OR15-8A0A075B7B6 117 aa20.14■□□□□ 0.81
LDB1-202ENST00000425280 A0A087WW49 117 aa20.14■□□□□ 0.81
LDB1-202ENST00000425280 TCF24Q7RTU0 167 aa20.14■□□□□ 0.81
LDB1-202ENST00000425280 CT45A10P0DMU9 189 aa20.14■□□□□ 0.81
LDB1-202ENST00000425280 OR2D3Q8NGH3 330 aa20.14■□□□□ 0.81
LDB1-202ENST00000425280 GTSF1Q8WW33 167 aa20.14■□□□□ 0.81
LDB1-202ENST00000425280 MRPL18Q9H0U6 180 aaKnown RBP20.14■□□□□ 0.81
LDB1-202ENST00000425280 CLEC5AQ9NY25 188 aa20.14■□□□□ 0.81
LDB1-202ENST00000425280 SNURFLB1AK76 121 aa20.13■□□□□ 0.81
LDB1-202ENST00000425280 SOCS3O14543 225 aa20.13■□□□□ 0.81
LDB1-202ENST00000425280 GPR61Q9BZJ8 451 aa20.13■□□□□ 0.81
LDB1-202ENST00000425280 TMEM136Q6ZRR5 245 aa20.12■□□□□ 0.81
LDB1-202ENST00000425280 C20orf173Q96LM9 149 aa20.12■□□□□ 0.81
LDB1-202ENST00000425280 GFRA4Q9GZZ7 299 aa20.12■□□□□ 0.81
LDB1-202ENST00000425280 WDR73Q6P4I2 378 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms