RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SPG11Q96JI7 2443 aa10.95□□□□□ -0.66
CCDC88A-204ENST00000413716 PDE6HQ13956 83 aa10.95□□□□□ -0.66
CCDC88A-204ENST00000413716 ZNF664Q8N3J9 261 aa10.95□□□□□ -0.66
CCDC88A-204ENST00000413716 Q8TAT8 98 aa10.95□□□□□ -0.66
CCDC88A-204ENST00000413716 C17orf100A8MU93 164 aa10.95□□□□□ -0.66
CCDC88A-204ENST00000413716 SLC25A16P16260 332 aa10.95□□□□□ -0.66
CCDC88A-204ENST00000413716 LINC00271P0C7V0 271 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 SMRP1Q8NCR6 262 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 H3BMG7 143 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 PSMB8P28062 276 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 DAD1P61803 113 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 TREML4Q6UXN2 200 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 TMEM75Q8N9X5 138 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 THBDP07204 575 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 CD24P25063 80 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 C11orf44Q8N8P7 122 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 ZNF362Q5T0B9 420 aaPredicted RBP10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 RNF166Q96A37 237 aaPredicted RBP10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 HERVK_113P63121 156 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 RPP25Q9BUL9 199 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 TIMM23O14925 209 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 CDKN1AP38936 164 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 PYY3Q5JQD4 70 aa10.94□□□□□ -0.66
CCDC88A-204ENST00000413716 CDCP2Q5VXM1 449 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 KIF26AQ9ULI4 1882 aaPredicted RBP10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 A0A1B0GTI1 187 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 NDPQ00604 133 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 RNF114Q9Y508 228 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 CEP192Q8TEP8 1941 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 VWC2Q2TAL6 325 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 IGLC2P0DOY2 106 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 IGLC3P0DOY3 106 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 KLHL30-AS1Q8NEE0 82 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 V9GYY9 64 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 NDUFA12Q9UI09 145 aa10.93□□□□□ -0.66
CCDC88A-204ENST00000413716 DKK4Q9UBT3 224 aa10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 MSRB2Q9Y3D2 182 aa10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 IGFBP6P24592 240 aaPredicted RBP10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 FAM201AQ5SY85 155 aa10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 BAALC-AS2P0C853 105 aa10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 NAV3Q8IVL0 2385 aa10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 NXPH4O95158 308 aa10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 SRSF8Q9BRL6 282 aaKnown RBP10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 PRR15LQ9BU68 103 aa10.92□□□□□ -0.66
CCDC88A-204ENST00000413716 K7ERJ3 54 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 SPATA31B1PQ5VZV4 182 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 COX8AP10176 69 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 IGHV4-28A0A0C4DH34 117 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 CFPP27918 469 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 IGKV1-8A0A0C4DH67 115 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 FAM236AA0A1B0GUQ0 79 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 FAM236BA0A1B0GV22 79 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 DSCR9P59020 149 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 SRSF2Q01130 221 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 C20orf144Q9BQM9 153 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 RFNGQ9Y644 331 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 FGF16O43320 207 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 ZNF329Q86UD4 541 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 R3HDMLQ9H3Y0 253 aa10.91□□□□□ -0.66
CCDC88A-204ENST00000413716 CCL3L1P16619 93 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 VMO1Q7Z5L0 202 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 GLRX5Q86SX6 157 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 PRR31Q5SQ13 230 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 LINC01545Q5VT33 79 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 VSIG2Q96IQ7 327 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 POLR3KQ9Y2Y1 108 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 TET2Q6N021 2002 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 PTPRQQ9UMZ3 2332 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 TFF2Q03403 129 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 WFDC1Q9HC57 220 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 DAZ1Q9NQZ3 744 aaKnown RBP10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 EXPH5Q8NEV8 1989 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 PATE3B3GLJ2 98 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 TMEM219Q86XT9 240 aa10.9□□□□□ -0.66
CCDC88A-204ENST00000413716 Q8N8P6 123 aa10.9□□□□□ -0.67
CCDC88A-204ENST00000413716 MCRIP2Q9BUT9 160 aaKnown RBP10.9□□□□□ -0.67
CCDC88A-204ENST00000413716 SHANK3Q9BYB0 1731 aa10.9□□□□□ -0.67
CCDC88A-204ENST00000413716 IGHV2-26A0A0B4J1V2 119 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 CELA3BP08861 270 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 M0R1W7 72 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 PSG7Q13046 419 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 NLRC5Q86WI3 1866 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 IGKV1D-13A0A0B4J2D9 117 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 IGKV1-13P0DP09 117 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 APOC4P55056 127 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 A0A0G2JMZ2 1700 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 LRRC37A2A6NM11 1700 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 LRRC37AA6NMS7 1700 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 CREBBPQ92793 2442 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 HLA-DRB4P13762 266 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 C4orf48Q5BLP8 95 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 LINC01590Q5TEZ4 76 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 HLA-DRB4X5D2U9 266 aa10.89□□□□□ -0.67
CCDC88A-204ENST00000413716 Q86TA4 180 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 PIP4P2Q8N4L2 257 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 TEX22C9J3V5 150 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 C2orf66Q6UXQ4 117 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 SLC22A18ASQ8N1D0 253 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 NPSP0C0P6 89 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms