RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 RNF222A6NCQ9 220 aa14.96□□□□□ -0.01
VSX1-204ENST00000409958 G3V3Q6 166 aa14.96□□□□□ -0.01
VSX1-204ENST00000409958 CRXO43186 299 aaPredicted RBP14.96□□□□□ -0.01
VSX1-204ENST00000409958 INSP01308 110 aa14.96□□□□□ -0.01
VSX1-204ENST00000409958 NBEAP1P0C6P0 100 aa14.96□□□□□ -0.01
VSX1-204ENST00000409958 PRB4P10163 310 aaPredicted RBP14.96□□□□□ -0.01
VSX1-204ENST00000409958 NANOS2P60321 138 aaKnown RBP14.96□□□□□ -0.01
VSX1-204ENST00000409958 ACOT6Q3I5F7 207 aaPredicted RBP14.96□□□□□ -0.01
VSX1-204ENST00000409958 CEMP1Q6PRD7 247 aaPredicted RBP14.96□□□□□ -0.01
VSX1-204ENST00000409958 M6PRP20645 277 aa14.95□□□□□ -0.02
VSX1-204ENST00000409958 TAS2R45P59539 299 aa14.95□□□□□ -0.02
VSX1-204ENST00000409958 PHLDA1Q8WV24 401 aaPredicted RBP14.95□□□□□ -0.02
VSX1-204ENST00000409958 RNF141Q8WVD5 230 aa14.95□□□□□ -0.02
VSX1-204ENST00000409958 FXYD5Q96DB9 178 aa14.95□□□□□ -0.02
VSX1-204ENST00000409958 AAMDCQ9H7C9 122 aa14.95□□□□□ -0.02
VSX1-204ENST00000409958 TMEM189A5PLL7 270 aa14.94□□□□□ -0.02
VSX1-204ENST00000409958 OR7C2O60412 319 aa14.94□□□□□ -0.02
VSX1-204ENST00000409958 KHDC3LQ587J8 217 aa14.94□□□□□ -0.02
VSX1-204ENST00000409958 HSD17B11Q8NBQ5 300 aa14.94□□□□□ -0.02
VSX1-204ENST00000409958 OR2G3Q8NGZ4 309 aa14.94□□□□□ -0.02
VSX1-204ENST00000409958 PSMG3Q9BT73 122 aaPredicted RBP14.94□□□□□ -0.02
VSX1-204ENST00000409958 PLECQ15149 4684 aaKnown RBP14.94□□□□□ -0.02
VSX1-204ENST00000409958 M0R3E3 92 aa14.93□□□□□ -0.02
VSX1-204ENST00000409958 OR10J4P0C629 311 aa14.93□□□□□ -0.02
VSX1-204ENST00000409958 CDKN1BP46527 198 aa14.93□□□□□ -0.02
VSX1-204ENST00000409958 BAP18Q8IXM2 172 aa14.93□□□□□ -0.02
VSX1-204ENST00000409958 ZNF503Q96F45 646 aa14.93□□□□□ -0.02
VSX1-204ENST00000409958 TMEM208Q9BTX3 173 aa14.93□□□□□ -0.02
VSX1-204ENST00000409958 KLK5Q9Y337 293 aaPredicted RBP14.93□□□□□ -0.02
VSX1-204ENST00000409958 TRAV12-2A0A075B6T6 113 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 LCE6AA0A183 80 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 NPIPB6E9PJ23 425 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 HBE1P02100 147 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 ATP6V0CP27449 155 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 EXOC3-AS1Q8N2X6 119 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 LYSTQ99698 3801 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 A0A1W2PPV4 95 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 TSPOP30536 169 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 RAB2AP61019 212 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 UBE2L3P68036 154 aaKnown RBP14.92□□□□□ -0.02
VSX1-204ENST00000409958 ICAM4Q14773 271 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 RRN3P1Q2M238 152 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 OR10G4Q8NGN3 311 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 OR10G9Q8NGN4 311 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 OR10G7Q8NGN6 311 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 ODF3Q96PU9 254 aa14.92□□□□□ -0.02
VSX1-204ENST00000409958 SACSQ9NZJ4 4579 aa14.91□□□□□ -0.02
VSX1-204ENST00000409958 BORCS7-ASMTA0A0B4J1R7 106 aa14.91□□□□□ -0.02
VSX1-204ENST00000409958 SERF2P84101 59 aa14.91□□□□□ -0.02
VSX1-204ENST00000409958 LYPD1Q8N2G4 141 aa14.91□□□□□ -0.02
VSX1-204ENST00000409958 TMEM256Q8N2U0 113 aa14.91□□□□□ -0.02
VSX1-204ENST00000409958 RPP25LQ8N5L8 163 aaKnown RBP14.91□□□□□ -0.02
VSX1-204ENST00000409958 PHYHIPLQ96FC7 376 aa14.91□□□□□ -0.02
VSX1-204ENST00000409958 CELA1Q9UNI1 258 aa14.91□□□□□ -0.02
VSX1-204ENST00000409958 JTBO76095 146 aa14.9□□□□□ -0.02
VSX1-204ENST00000409958 MBP02144 154 aa14.9□□□□□ -0.02
VSX1-204ENST00000409958 CT45A10P0DMU9 189 aa14.9□□□□□ -0.02
VSX1-204ENST00000409958 RPL7L1Q6DKI1 246 aaKnown RBP14.9□□□□□ -0.02
VSX1-204ENST00000409958 FAM122CQ6P4D5 195 aa14.9□□□□□ -0.02
VSX1-204ENST00000409958 PQLC2Q6ZP29 291 aa14.9□□□□□ -0.02
VSX1-204ENST00000409958 LOC102723971A0A1B0GUV8 181 aa14.89□□□□□ -0.03
VSX1-204ENST00000409958 C11orf94C9JXX5 98 aa14.89□□□□□ -0.03
VSX1-204ENST00000409958 ARPC5O15511 151 aa14.89□□□□□ -0.03
VSX1-204ENST00000409958 EMP1P54849 157 aa14.89□□□□□ -0.03
VSX1-204ENST00000409958 GNPNAT1Q96EK6 184 aaPredicted RBP14.89□□□□□ -0.03
VSX1-204ENST00000409958 C20orf144Q9BQM9 153 aa14.89□□□□□ -0.03
VSX1-204ENST00000409958 SMLR1H3BR10 107 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 TAAR5O14804 337 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 EIF3GO75821 320 aaKnown RBP eCLIP14.88□□□□□ -0.03
VSX1-204ENST00000409958 SPART-AS1P0CW21 52 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 LEPP41159 167 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 CDC34P49427 236 aaPredicted RBP14.88□□□□□ -0.03
VSX1-204ENST00000409958 RANP62826 216 aaKnown RBP14.88□□□□□ -0.03
VSX1-204ENST00000409958 C12orf74Q32Q52 190 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 Q6ZTC4 211 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 LINC00477Q96M19 166 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 SH3BGRL3Q9H299 93 aa14.88□□□□□ -0.03
VSX1-204ENST00000409958 TEX48A0A1B0GUV7 120 aa14.87□□□□□ -0.03
VSX1-204ENST00000409958 ZNF705GA8MUZ8 300 aaPredicted RBP14.87□□□□□ -0.03
VSX1-204ENST00000409958 ERCC8Q13216 396 aa14.87□□□□□ -0.03
VSX1-204ENST00000409958 C9orf47Q6ZRZ4 202 aa14.87□□□□□ -0.03
VSX1-204ENST00000409958 LINC01587Q99440 93 aa14.87□□□□□ -0.03
VSX1-204ENST00000409958 Q9H3A6 140 aa14.87□□□□□ -0.03
VSX1-204ENST00000409958 CSN1S1P47710 185 aa14.86□□□□□ -0.03
VSX1-204ENST00000409958 TAS2R60P59551 318 aa14.86□□□□□ -0.03
VSX1-204ENST00000409958 KIR3DS1Q14943 382 aa14.86□□□□□ -0.03
VSX1-204ENST00000409958 GFI1BQ5VTD9 330 aa14.86□□□□□ -0.03
VSX1-204ENST00000409958 AGPAT4-IT1Q9H0P7 198 aa14.86□□□□□ -0.03
VSX1-204ENST00000409958 DKK2Q9UBU2 259 aa14.86□□□□□ -0.03
VSX1-204ENST00000409958 YTHDF2Q9Y5A9 579 aaKnown RBP14.86□□□□□ -0.03
VSX1-204ENST00000409958 IGKV2-40A0A087WW87 121 aaPredicted RBP14.85□□□□□ -0.03
VSX1-204ENST00000409958 TRAV10A0A0B4J240 114 aa14.85□□□□□ -0.03
VSX1-204ENST00000409958 HMGB3O15347 200 aaKnown RBP14.85□□□□□ -0.03
VSX1-204ENST00000409958 IGKV2D-40P01614 121 aaPredicted RBP14.85□□□□□ -0.03
VSX1-204ENST00000409958 STAG3L2P0CL84 134 aa14.85□□□□□ -0.03
VSX1-204ENST00000409958 STAG3L3P0CL85 134 aa14.85□□□□□ -0.03
VSX1-204ENST00000409958 FAM222AQ5U5X8 452 aa14.85□□□□□ -0.03
VSX1-204ENST00000409958 C2CD4CQ8TF44 421 aa14.85□□□□□ -0.03
VSX1-204ENST00000409958 RYR2Q92736 4967 aa14.85□□□□□ -0.03
VSX1-204ENST00000409958 H7BYZ3 331 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms