RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 IGHV3-48P01763 117 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 V9GYV3 84 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 C8orf86Q6ZUL3 223 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 USMG5Q96IX5 58 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 LSM4Q9Y4Z0 139 aaKnown RBP10.56□□□□□ -0.72
COL6A3-206ENST00000409809 SP7Q8TDD2 431 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-206ENST00000409809 KIAA1549LQ6ZVL6 1849 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 TRAV41A0A0B4J266 112 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 LOC101059948A0A1B0GTJ6 334 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 H3BT86 120 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 CEACAM8P31997 349 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-206ENST00000409809 PKIGQ9Y2B9 76 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 LOC102723996A0A087X1L8 192 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 UQCRQO14949 82 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 ORMDL1Q9P0S3 153 aa10.56□□□□□ -0.72
COL6A3-206ENST00000409809 TRGV4A0A0C4DH28 118 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 C1QCP02747 245 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 LEAP2Q969E1 77 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 VSIG2Q96IQ7 327 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 CELA3AP09093 270 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 MP68P56378 58 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 HERVK_113P63121 156 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 ATP5EP2Q5VTU8 51 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 FAM236AA0A1B0GUQ0 79 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 FAM236BA0A1B0GV22 79 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 CXCL5P42830 114 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 RHOHQ15669 191 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 A0A0A6YYD4 124 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 IGKV1-9A0A0C4DH69 117 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 C2orf66Q6UXQ4 117 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 WBP1Q96G27 269 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 E9PQ18 207 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 STHQ8IWL8 128 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 IGHV3-64A0A075B6Q5 118 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 FAM223BA6NKX1 122 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 GATA2P23769 480 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-206ENST00000409809 FAM223AQ8IWN6 122 aa10.55□□□□□ -0.72
COL6A3-206ENST00000409809 CHCHD2Q9Y6H1 151 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-206ENST00000409809 A0A087WX48 190 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 A0A1W2PR77 199 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 COX6A1P12074 109 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 IMMP1LQ96LU5 166 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 CLEC19AQ6UXS0 136 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 NTN3O00634 580 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-206ENST00000409809 INSP01308 110 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 QRFPP83859 136 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 ZNF876PQ49A33 203 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 NDUFC1O43677 76 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 ZNF493Q6ZR52 646 aa10.54□□□□□ -0.72
COL6A3-206ENST00000409809 CFC1BP0CG36 223 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 CFC1P0CG37 223 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 ITLN2Q8WWU7 325 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-206ENST00000409809 ZCCHC24Q8N2G6 241 aaKnown RBP10.53□□□□□ -0.72
COL6A3-206ENST00000409809 HERV-K104P63124 156 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 J3QQQ9 107 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 CELA2BP08218 269 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-206ENST00000409809 MINOS1Q5TGZ0 78 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 SHANK2-AS3Q9BTD1 123 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 MINOS1-NBL1R4GNA1 71 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 A0A1B0GX51 115 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 SPG11Q96JI7 2443 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 TNS1Q9HBL0 1735 aaKnown RBP10.53□□□□□ -0.72
COL6A3-206ENST00000409809 IGKV1-5P01602 117 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 IGKV3D-20A0A0C4DH25 116 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 HAMPP81172 84 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 EXOC3-AS1Q8N2X6 119 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 TP53TG1Q9Y2A0 90 aa10.53□□□□□ -0.72
COL6A3-206ENST00000409809 INS-IGF2F8WCM5 200 aa10.52□□□□□ -0.72
COL6A3-206ENST00000409809 FOXI1Q12951 378 aa10.52□□□□□ -0.72
COL6A3-206ENST00000409809 CRLF1O75462 422 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 SCRT1Q9BWW7 348 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 C15orf62A8K5M9 175 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 CENPVQ7Z7K6 275 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-206ENST00000409809 PRDM6Q9NQX0 595 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 CRYGSP22914 178 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 FUSP35637 526 aaKnown RBP eCLIP10.52□□□□□ -0.73
COL6A3-206ENST00000409809 TMEM14BQ9NUH8 114 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 IGLC1P0CG04 106 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 NDUFV3P56181 108 aaKnown RBP10.52□□□□□ -0.73
COL6A3-206ENST00000409809 SRRM4A7MD48 611 aaKnown RBP10.52□□□□□ -0.73
COL6A3-206ENST00000409809 JMJD7-PLA2G4BH0Y9G9 81 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 TMEM92Q6UXU6 159 aa10.52□□□□□ -0.73
COL6A3-206ENST00000409809 RCHY1Q96PM5 261 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 SMIM2Q9BVW6 85 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 NDUFA12Q9UI09 145 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 IGHV1-69DA0A0B4J2H0 117 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 LYRM9A8MSI8 78 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 C20orf173Q96LM9 149 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 TRAV26-1A0A087WT03 109 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 CECR9P0C854 216 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 SRRM5B3KS81 715 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 SCRT2Q9NQ03 307 aa10.51□□□□□ -0.73
COL6A3-206ENST00000409809 MORN5Q5VZ52 161 aa10.5□□□□□ -0.73
COL6A3-206ENST00000409809 NBL1P41271 181 aa10.5□□□□□ -0.73
COL6A3-206ENST00000409809 IGFBP6P24592 240 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-206ENST00000409809 PSG7Q13046 419 aa10.5□□□□□ -0.73
COL6A3-206ENST00000409809 PNRC2Q9NPJ4 139 aaKnown RBP10.5□□□□□ -0.73
COL6A3-206ENST00000409809 IMUPQ9GZP8 106 aa10.5□□□□□ -0.73
COL6A3-206ENST00000409809 PRRC2AP48634 2157 aaKnown RBP10.5□□□□□ -0.73
COL6A3-206ENST00000409809 NUP210LQ5VU65 1888 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms