RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 PRM2P04554 102 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 CDKN1BP46527 198 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 IFITM3Q01628 133 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 GUK1Q16774 197 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 POM121L12Q8N7R1 296 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 OR10J6PQ8NGY7 276 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 LINC01587Q99440 93 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 SLC25A31Q9H0C2 315 aa9.53□□□□□ -0.88
VCX3A-202ENST00000398729 TRAV5A0A0B4J249 113 aa9.52□□□□□ -0.89
VCX3A-202ENST00000398729 LYRM9A8MSI8 78 aa9.52□□□□□ -0.89
VCX3A-202ENST00000398729 INMT-MINDY4F8WBC2 141 aa9.52□□□□□ -0.89
VCX3A-202ENST00000398729 H3BQ15 152 aa9.52□□□□□ -0.89
VCX3A-202ENST00000398729 SIX6O95475 246 aa9.52□□□□□ -0.89
VCX3A-202ENST00000398729 PRB4P10163 310 aaPredicted RBP9.52□□□□□ -0.89
VCX3A-202ENST00000398729 TAS2R60P59551 318 aa9.52□□□□□ -0.89
VCX3A-202ENST00000398729 CYCSP99999 105 aaKnown RBP9.52□□□□□ -0.89
VCX3A-202ENST00000398729 SAT2Q96F10 170 aaPredicted RBP9.52□□□□□ -0.89
VCX3A-202ENST00000398729 NMES1Q9C002 83 aa9.52□□□□□ -0.89
VCX3A-202ENST00000398729 E5RGE8 158 aa9.51□□□□□ -0.89
VCX3A-202ENST00000398729 ZNF253O75346 499 aa9.51□□□□□ -0.89
VCX3A-202ENST00000398729 NHLH2Q02577 135 aa9.51□□□□□ -0.89
VCX3A-202ENST00000398729 LRRC37A5PQ49AS3 106 aa9.51□□□□□ -0.89
VCX3A-202ENST00000398729 C20orf144Q9BQM9 153 aa9.51□□□□□ -0.89
VCX3A-202ENST00000398729 NPCDR1Q9BY65 106 aa9.51□□□□□ -0.89
VCX3A-202ENST00000398729 A0A1B0GVY2 172 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 HTN1P15515 57 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 AZU1P20160 251 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 DEFA1P59665 94 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 DEFA3P59666 94 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 OR5C1Q8NGR4 320 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 C16orf74Q96GX8 76 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 MARVELD1Q9BSK0 173 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 ZNF586Q9NXT0 402 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 OR5AC2Q9NZP5 309 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 TMEM14CQ9P0S9 112 aa9.5□□□□□ -0.89
VCX3A-202ENST00000398729 TRBV19A0A075B6N1 114 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 PLAC8L1A1L4L8 177 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 PRAC2D3DTV9 90 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 H7BYZ3 331 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 DEFB130BP0DP73 79 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 DEFB130AP0DP74 79 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 TMEM88Q6PEY1 159 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 ZNF493Q6ZR52 646 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 UBE2DNLQ8IWF7 75 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 THAP6Q8TBB0 222 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 HSPG2P98160 4391 aa9.49□□□□□ -0.89
VCX3A-202ENST00000398729 H0YIZ8 118 aa9.48□□□□□ -0.89
VCX3A-202ENST00000398729 HIST1H1EP10412 219 aaKnown RBP9.48□□□□□ -0.89
VCX3A-202ENST00000398729 PDE6HQ13956 83 aa9.48□□□□□ -0.89
VCX3A-202ENST00000398729 CLINT1Q14677 625 aa9.48□□□□□ -0.89
VCX3A-202ENST00000398729 TMEM263Q8WUH6 116 aaKnown RBP9.48□□□□□ -0.89
VCX3A-202ENST00000398729 MRPL53Q96EL3 112 aaKnown RBP9.48□□□□□ -0.89
VCX3A-202ENST00000398729 ODF3Q96PU9 254 aa9.48□□□□□ -0.89
VCX3A-202ENST00000398729 PARD6GQ9BYG4 376 aaPredicted RBP9.48□□□□□ -0.89
VCX3A-202ENST00000398729 KRTAP4-5Q9BYR2 181 aa9.48□□□□□ -0.89
VCX3A-202ENST00000398729 KCNIP2Q9NS61 270 aa9.48□□□□□ -0.89
VCX3A-202ENST00000398729 TIMM9Q9Y5J7 89 aa9.48□□□□□ -0.89
VCX3A-202ENST00000398729 TIMM8BQ9Y5J9 83 aaPredicted RBP9.48□□□□□ -0.89
VCX3A-202ENST00000398729 NPIPB6E9PJ23 425 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 SSNA1O43805 119 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 PET100P0DJ07 73 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 CT45A10P0DMU9 189 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 MED14OSP0DP75 135 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 LEPP41159 167 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 H2BFSP57053 126 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 KIR3DS1Q14943 382 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 FCN2Q15485 313 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 GCSAMLQ5JQS6 135 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 GFI1BQ5VTD9 330 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 CCDC28AQ8IWP9 274 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 C15orf53Q8NAA6 179 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 RNASE8Q8TDE3 154 aaKnown RBP9.47□□□□□ -0.89
VCX3A-202ENST00000398729 PPP1R1CQ8WVI7 109 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 WDR61Q9GZS3 305 aaKnown RBP9.47□□□□□ -0.89
VCX3A-202ENST00000398729 PRELID1Q9Y255 219 aa9.47□□□□□ -0.89
VCX3A-202ENST00000398729 CBY3A6NI87 242 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 M0R3E3 92 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 ATP5G1P05496 136 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 PYYP10082 97 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 ATP5G3P48201 142 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 RNF212Q495C1 297 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 BLNKQ8WV28 456 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 AAMDCQ9H7C9 122 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 BATF3Q9NR55 127 aa9.46□□□□□ -0.9
VCX3A-202ENST00000398729 C17orf112F2Z3M2 114 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 F5H768 121 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 J3KRW8 73 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 M0R2N4 97 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 NDUFB4O95168 129 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 LINC00336Q6ZUF6 198 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 MIR17HGQ75NE6 70 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 SLC25A2Q9BXI2 301 aa9.45□□□□□ -0.9
VCX3A-202ENST00000398729 MRPL32Q9BYC8 188 aaKnown RBP9.45□□□□□ -0.9
VCX3A-202ENST00000398729 NOP10Q9NPE3 64 aaKnown RBP9.45□□□□□ -0.9
VCX3A-202ENST00000398729 TRAV12-3A0A0B4J271 114 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 MPC2O95563 127 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 SLC25A5P05141 298 aaKnown RBP9.44□□□□□ -0.9
VCX3A-202ENST00000398729 LGALS9BQ3B8N2 356 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 EXOC3-AS1Q8N2X6 119 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 FAM167A-AS1Q96KT0 104 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms