RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 SHISA9B4DS77 424 aa11.46□□□□□ -0.58
PCDHA11-201ENST00000398640 IGLV1-44P01699 117 aa11.46□□□□□ -0.58
PCDHA11-201ENST00000398640 RPP25LQ8N5L8 163 aaKnown RBP11.46□□□□□ -0.58
PCDHA11-201ENST00000398640 CYTL1Q9NRR1 136 aa11.46□□□□□ -0.58
PCDHA11-201ENST00000398640 NMSQ5H8A3 153 aa11.45□□□□□ -0.58
PCDHA11-201ENST00000398640 VOPP1Q96AW1 172 aa11.45□□□□□ -0.58
PCDHA11-201ENST00000398640 TMEM158Q8WZ71 300 aa11.45□□□□□ -0.58
PCDHA11-201ENST00000398640 DAZAP2Q15038 168 aaPredicted RBP11.45□□□□□ -0.58
PCDHA11-201ENST00000398640 DUX4L9Q6RFH8 374 aaPredicted RBP11.45□□□□□ -0.58
PCDHA11-201ENST00000398640 PLXND1Q9Y4D7 1925 aa11.45□□□□□ -0.58
PCDHA11-201ENST00000398640 FER1L5A0AVI2 2057 aa11.45□□□□□ -0.58
PCDHA11-201ENST00000398640 hDV102S1A0JD36 115 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 ZNF561-AS1K7EIQ3 104 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 SAMD5Q5TGI4 173 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 MS4A6AQ9H2W1 248 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 A8MWV9 139 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 RNASE2P10153 161 aaKnown RBP11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 AMN1Q8IY45 258 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 LINC00587B1AMM8 73 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 TCTEX1D4Q5JR98 221 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 FAM120AOSQ5T036 256 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 KIF26BQ2KJY2 2108 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 A0A0G2JRQ6 117 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 PLEKHB2Q96CS7 222 aa11.44□□□□□ -0.58
PCDHA11-201ENST00000398640 TRBV6-6A0A0A6YYG2 114 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 LINC01551Q86U37 167 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 LINC00479Q96M42 142 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 C15orf62A8K5M9 175 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 TMEM14EPQ6UXP3 125 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 NRGNQ92686 78 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 DLX4Q92988 240 aaPredicted RBP11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 A0A1W2PPI3 338 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 AZU1P20160 251 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 C8orf49Q96NF6 230 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 TRAV1-1A0A0B4J248 108 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 GUSBP1Q15486 140 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 TMEM242Q9NWH2 141 aa11.43□□□□□ -0.58
PCDHA11-201ENST00000398640 LINC01549A6NIU2 74 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 PRIMA1Q86XR5 153 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 TRAV12-2A0A075B6T6 113 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 ITGB1BP1O14713 200 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 LEPROTO15243 131 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 NDUFS7O75251 213 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 ARMS2P0C7Q2 107 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 ZNF48Q96MX3 618 aaPredicted RBP11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 FREM3P0C091 2139 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 NDUFB8O95169 186 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 LIME1Q9H400 295 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 MYLKQ15746 1914 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 HSD52Q0P140 79 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 Q8NA96 180 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 SMPXQ9UHP9 88 aa11.42□□□□□ -0.58
PCDHA11-201ENST00000398640 MPDZO75970 2070 aa11.41□□□□□ -0.58
PCDHA11-201ENST00000398640 BCL6BQ8N143 479 aaPredicted RBP11.41□□□□□ -0.58
PCDHA11-201ENST00000398640 TIMM21Q9BVV7 248 aa11.41□□□□□ -0.58
PCDHA11-201ENST00000398640 HIST1H2BLQ99880 126 aa11.41□□□□□ -0.58
PCDHA11-201ENST00000398640 A0A1B0GW64 132 aa11.41□□□□□ -0.58
PCDHA11-201ENST00000398640 ASPHD1Q5U4P2 390 aa11.41□□□□□ -0.58
PCDHA11-201ENST00000398640 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 TRAV8-3A0A0A6YYJ7 113 aa11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 IGHV3-38A0A0C4DH36 116 aa11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 SHANK2-AS3Q9BTD1 123 aa11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 IGLV2-23P01705 113 aa11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 DEFB112Q30KQ8 113 aa11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 FAM90A2PQ658T7 463 aa11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 ANAPC10Q9UM13 185 aa11.4□□□□□ -0.58
PCDHA11-201ENST00000398640 ZFHX2Q9C0A1 2572 aaPredicted RBP11.4□□□□□ -0.59
PCDHA11-201ENST00000398640 IGHV4-30-2A0A087WSY4 118 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 QRFPP83859 136 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 Q86TA4 180 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 POLEQ07864 2286 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 TRBV24-1A0A075B6N3 115 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 A0A087X0K7 114 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 IGHV2-5P01817 119 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 Q6ZRM9 215 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 IGF2BP2-AS1Q96M15 143 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 SEC11AP67812 179 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 LINC01559Q495D7 138 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 MED12Q93074 2177 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 LGALS1P09382 135 aaKnown RBP11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 ZNF562Q6V9R5 426 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 CACNA1HO95180 2353 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 IGLV3-9A0A075B6K5 115 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 IGHV4-59P01825 116 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 ANAPC13Q9BS18 74 aa11.39□□□□□ -0.59
PCDHA11-201ENST00000398640 MYMXA0A1B0GTQ4 84 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 Q6ZR03 302 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 Q6ZS49 121 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 LYPD1Q8N2G4 141 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 TMEM256Q8N2U0 113 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 CLPSL2Q6UWE3 100 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 DEFB136Q30KP8 78 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 PCNX2A6NKB5 2137 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 CACNA1DQ01668 2161 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 A0A0J9YY99 117 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 ZNF503-AS2A6NEH8 195 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 TMEM213A2RRL7 107 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 AMBPP02760 352 aa11.38□□□□□ -0.59
PCDHA11-201ENST00000398640 PFN2P35080 140 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms