RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 ZNF767PQ75MW2 155 aa16.99■□□□□ 0.31
SHMT1-204ENST00000395682 BAP18Q8IXM2 172 aa16.99■□□□□ 0.31
SHMT1-204ENST00000395682 C2CD4CQ8TF44 421 aa16.99■□□□□ 0.31
SHMT1-204ENST00000395682 BLNKQ8WV28 456 aa16.99■□□□□ 0.31
SHMT1-204ENST00000395682 RYR2Q92736 4967 aa16.99■□□□□ 0.31
SHMT1-204ENST00000395682 NDUFB4O95168 129 aa16.98■□□□□ 0.31
SHMT1-204ENST00000395682 SPART-AS1P0CW21 52 aa16.98■□□□□ 0.31
SHMT1-204ENST00000395682 RRN3P1Q2M238 152 aa16.98■□□□□ 0.31
SHMT1-204ENST00000395682 FFAR4Q5NUL3 377 aa16.98■□□□□ 0.31
SHMT1-204ENST00000395682 MRPL32Q9BYC8 188 aaKnown RBP16.98■□□□□ 0.31
SHMT1-204ENST00000395682 FUT9Q9Y231 359 aa16.98■□□□□ 0.31
SHMT1-204ENST00000395682 LOC102723971A0A1B0GUV8 181 aa16.97■□□□□ 0.31
SHMT1-204ENST00000395682 PDE6HQ13956 83 aa16.97■□□□□ 0.31
SHMT1-204ENST00000395682 PARD6GQ9BYG4 376 aaPredicted RBP16.97■□□□□ 0.31
SHMT1-204ENST00000395682 TRAV10A0A0B4J240 114 aa16.96■□□□□ 0.31
SHMT1-204ENST00000395682 GIPP09681 153 aaPredicted RBP16.96■□□□□ 0.31
SHMT1-204ENST00000395682 Q5BKY6 102 aa16.96■□□□□ 0.31
SHMT1-204ENST00000395682 LINC00476Q8WZB0 136 aa16.96■□□□□ 0.31
SHMT1-204ENST00000395682 OR51M1Q9H341 326 aa16.96■□□□□ 0.31
SHMT1-204ENST00000395682 DNAH1Q9P2D7 4330 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 ZNF705GA8MUZ8 300 aaPredicted RBP16.95■□□□□ 0.3
SHMT1-204ENST00000395682 LY6G6CO95867 125 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 PRM2P04554 102 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 NBEAP1P0C6P0 100 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 CDKN1BP46527 198 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 OXA1LQ15070 435 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 RPP25LQ8N5L8 163 aaKnown RBP16.95■□□□□ 0.3
SHMT1-204ENST00000395682 ASB13Q8WXK3 278 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 PAXXQ9BUH6 204 aa16.95■□□□□ 0.3
SHMT1-204ENST00000395682 IGLL5B9A064 214 aa16.94■□□□□ 0.3
SHMT1-204ENST00000395682 M0R3E3 92 aa16.94■□□□□ 0.3
SHMT1-204ENST00000395682 EXOC3-AS1Q8N2X6 119 aa16.94■□□□□ 0.3
SHMT1-204ENST00000395682 RNF141Q8WVD5 230 aa16.94■□□□□ 0.3
SHMT1-204ENST00000395682 MRPL53Q96EL3 112 aaKnown RBP16.94■□□□□ 0.3
SHMT1-204ENST00000395682 LINC01587Q99440 93 aa16.94■□□□□ 0.3
SHMT1-204ENST00000395682 PRELID1Q9Y255 219 aa16.94■□□□□ 0.3
SHMT1-204ENST00000395682 ALMS1Q8TCU4 4167 aa16.94■□□□□ 0.3
SHMT1-204ENST00000395682 OR10J4P0C629 311 aa16.93■□□□□ 0.3
SHMT1-204ENST00000395682 TSPOP30536 169 aa16.93■□□□□ 0.3
SHMT1-204ENST00000395682 FAM222AQ5U5X8 452 aa16.93■□□□□ 0.3
SHMT1-204ENST00000395682 FXYD5Q96DB9 178 aa16.93■□□□□ 0.3
SHMT1-204ENST00000395682 AQP10Q96PS8 301 aa16.93■□□□□ 0.3
SHMT1-204ENST00000395682 AAMDCQ9H7C9 122 aa16.93■□□□□ 0.3
SHMT1-204ENST00000395682 DKK2Q9UBU2 259 aa16.93■□□□□ 0.3
SHMT1-204ENST00000395682 YTHDF2Q9Y5A9 579 aaKnown RBP16.93■□□□□ 0.3
SHMT1-204ENST00000395682 NPIPB6E9PJ23 425 aa16.92■□□□□ 0.3
SHMT1-204ENST00000395682 OR7C2O60412 319 aa16.92■□□□□ 0.3
SHMT1-204ENST00000395682 CT45A10P0DMU9 189 aa16.92■□□□□ 0.3
SHMT1-204ENST00000395682 KIR3DS1Q14943 382 aa16.92■□□□□ 0.3
SHMT1-204ENST00000395682 TMEM256Q8N2U0 113 aa16.92■□□□□ 0.3
SHMT1-204ENST00000395682 DEFB131BA0A096LNP1 70 aa16.91■□□□□ 0.3
SHMT1-204ENST00000395682 ICAM4Q14773 271 aa16.91■□□□□ 0.3
SHMT1-204ENST00000395682 PLA2G2EQ9NZK7 142 aa16.91■□□□□ 0.3
SHMT1-204ENST00000395682 TEX48A0A1B0GUV7 120 aa16.9■□□□□ 0.3
SHMT1-204ENST00000395682 HTN1P15515 57 aa16.9■□□□□ 0.3
SHMT1-204ENST00000395682 TCTAP57738 103 aa16.9■□□□□ 0.3
SHMT1-204ENST00000395682 ERCC8Q13216 396 aa16.9■□□□□ 0.3
SHMT1-204ENST00000395682 ACOT6Q3I5F7 207 aaPredicted RBP16.9■□□□□ 0.3
SHMT1-204ENST00000395682 ZNF503Q96F45 646 aa16.9■□□□□ 0.3
SHMT1-204ENST00000395682 NIPSNAP3BQ9BS92 247 aa16.9■□□□□ 0.3
SHMT1-204ENST00000395682 AZU1P20160 251 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 LEPP41159 167 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 TAS2R45P59539 299 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 TAS2R60P59551 318 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 ZNF266Q14584 549 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 FAM122CQ6P4D5 195 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 INO80EQ8NBZ0 244 aaPredicted RBP16.89■□□□□ 0.29
SHMT1-204ENST00000395682 OR2T35Q8NGX2 323 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 ODF3Q96PU9 254 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 APLNQ9ULZ1 77 aa16.89■□□□□ 0.29
SHMT1-204ENST00000395682 J3KRW8 73 aa16.88■□□□□ 0.29
SHMT1-204ENST00000395682 EIF3GO75821 320 aaKnown RBP eCLIP16.88■□□□□ 0.29
SHMT1-204ENST00000395682 M6PRP20645 277 aa16.88■□□□□ 0.29
SHMT1-204ENST00000395682 KHDC3LQ587J8 217 aa16.88■□□□□ 0.29
SHMT1-204ENST00000395682 PHYHIPLQ96FC7 376 aa16.88■□□□□ 0.29
SHMT1-204ENST00000395682 AGPAT4-IT1Q9H0P7 198 aa16.88■□□□□ 0.29
SHMT1-204ENST00000395682 FXYD6-FXYD2A0A087WZ82 144 aa16.87■□□□□ 0.29
SHMT1-204ENST00000395682 H7BYZ3 331 aa16.87■□□□□ 0.29
SHMT1-204ENST00000395682 RANP62826 216 aaKnown RBP16.87■□□□□ 0.29
SHMT1-204ENST00000395682 UBE2L3P68036 154 aaKnown RBP16.87■□□□□ 0.29
SHMT1-204ENST00000395682 GFI1BQ5VTD9 330 aa16.87■□□□□ 0.29
SHMT1-204ENST00000395682 LGALS9CQ6DKI2 356 aa16.87■□□□□ 0.29
SHMT1-204ENST00000395682 HSD17B11Q8NBQ5 300 aa16.87■□□□□ 0.29
SHMT1-204ENST00000395682 LINC00477Q96M19 166 aa16.87■□□□□ 0.29
SHMT1-204ENST00000395682 C20orf144Q9BQM9 153 aa16.87■□□□□ 0.29
SHMT1-204ENST00000395682 A0A1W2PPV4 95 aa16.86■□□□□ 0.29
SHMT1-204ENST00000395682 RAB2AP61019 212 aa16.86■□□□□ 0.29
SHMT1-204ENST00000395682 OR10G4Q8NGN3 311 aa16.86■□□□□ 0.29
SHMT1-204ENST00000395682 OR10G9Q8NGN4 311 aa16.86■□□□□ 0.29
SHMT1-204ENST00000395682 OR10G7Q8NGN6 311 aa16.86■□□□□ 0.29
SHMT1-204ENST00000395682 IGHV4-4A0A075B6R2 117 aa16.85■□□□□ 0.29
SHMT1-204ENST00000395682 TNFSF18Q9UNG2 199 aa16.85■□□□□ 0.29
SHMT1-204ENST00000395682 HYDINQ4G0P3 5121 aa16.85■□□□□ 0.29
SHMT1-204ENST00000395682 IGKV2-40A0A087WW87 121 aaPredicted RBP16.84■□□□□ 0.29
SHMT1-204ENST00000395682 TRAV12-3A0A0B4J271 114 aa16.84■□□□□ 0.29
SHMT1-204ENST00000395682 IGKV2D-40P01614 121 aaPredicted RBP16.84■□□□□ 0.29
SHMT1-204ENST00000395682 ATP6V0CP27449 155 aa16.84■□□□□ 0.29
SHMT1-204ENST00000395682 DAD1P61803 113 aa16.84■□□□□ 0.29
SHMT1-204ENST00000395682 C9orf47Q6ZRZ4 202 aa16.84■□□□□ 0.29
SHMT1-204ENST00000395682 LYPD1Q8N2G4 141 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms