RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 ATP6V0E1O15342 81 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 CHRDL1Q9BU40 450 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 CST9LQ9H4G1 147 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 C1RLQ9NZP8 487 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 IGHV4-61A0A0C4DH41 118 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 ZNF785A8K8V0 405 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 ESDP10768 282 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 SPATA12Q7Z6I5 190 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 OR4F17Q8NGA8 305 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 THYN1Q9P016 225 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 USP24Q9UPU5 2620 aa10.89□□□□□ -0.67
SNCA-204ENST00000394989 MUC21A0A0G2JKD1 596 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 MUC21A0A140T8X8 626 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 MUC21Q5SSG8 566 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 LINC00173Q6ZV60 143 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 CIARTQ8N365 385 aaPredicted RBP10.88□□□□□ -0.67
SNCA-204ENST00000394989 WIPF2Q8TF74 440 aaPredicted RBP10.88□□□□□ -0.67
SNCA-204ENST00000394989 TMEM8BA6NDV4 472 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 PAX8Q06710 450 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 TMUB1Q9BVT8 246 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 MYO18BQ8IUG5 2567 aa10.88□□□□□ -0.67
SNCA-204ENST00000394989 IGHV3OR16-10A0A075B7F0 116 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 HLA-DQA1P01909 254 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 RPL19P84098 196 aaKnown RBP10.87□□□□□ -0.67
SNCA-204ENST00000394989 ECSCRQ19T08 205 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 GTSF1Q8WW33 167 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 CCL19Q99731 98 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 ASCL2Q99929 193 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 FBN2P35556 2912 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 SAP30O75446 220 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 COX19Q49B96 90 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 OR2D3Q8NGH3 330 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 FAM110DQ8TAY7 271 aaPredicted RBP10.87□□□□□ -0.67
SNCA-204ENST00000394989 C18orf32Q8TCD1 76 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 RPP21Q9H633 154 aaKnown RBP10.87□□□□□ -0.67
SNCA-204ENST00000394989 ZNF492Q9P255 531 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 M0R3E3 92 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 GOSR1O95249 250 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 OCIAD2Q56VL3 154 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 TCF24Q7RTU0 167 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 PRNTQ86SH4 94 aa10.87□□□□□ -0.67
SNCA-204ENST00000394989 A0A087X0K7 114 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 G3V318 75 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 ZNF138P52744 262 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 RASL11AQ6T310 242 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 C10orf105Q8TEF2 133 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 SPG11Q96JI7 2443 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 KLK9Q2XQG4 91 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 C15orf32Q32M92 178 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 LYPD1Q8N2G4 141 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 KLK9Q9UKQ9 250 aa10.86□□□□□ -0.67
SNCA-204ENST00000394989 TRAV9-2A0A087WT02 112 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 A0A1B0GXF2 115 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 FAM181BA6NEQ2 426 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 NPIPB6E9PJ23 425 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 C5orf56Q8N8D9 126 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 PIFOQ8TCI5 191 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 ZFYVE26Q68DK2 2539 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 IGHV3OR16-8A0A075B7F1 116 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 IGHV3-35A0A0C4DH35 117 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 OR4C46A6NHA9 309 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 K7EP13 123 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 P01737 135 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 BRD3OSQ6XYD6 125 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 SMIM15Q7Z3B0 74 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 TMEM219Q86XT9 240 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 TMEM75Q8N9X5 138 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 ZNF502Q8TBZ5 544 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 PIMREGQ9BSJ6 248 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 TRBV6-1A0A0K0K1D8 114 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 CSN3P07498 182 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 CT83Q5H943 113 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 OR10J3Q5JRS4 329 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 MEGF9Q9H1U4 602 aa10.85□□□□□ -0.67
SNCA-204ENST00000394989 RHOGP84095 191 aa10.84□□□□□ -0.67
SNCA-204ENST00000394989 IGHV4-30-2A0A087WSY4 118 aa10.84□□□□□ -0.67
SNCA-204ENST00000394989 GPR183P32249 361 aa10.84□□□□□ -0.67
SNCA-204ENST00000394989 PDE6HQ13956 83 aa10.84□□□□□ -0.67
SNCA-204ENST00000394989 C16orf54Q6UWD8 224 aa10.84□□□□□ -0.67
SNCA-204ENST00000394989 SMAD5-AS1Q9Y6J3 95 aa10.84□□□□□ -0.67
SNCA-204ENST00000394989 TRAV40A0A0B4J280 105 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 PSG3Q16557 428 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 S100A7AQ86SG5 101 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 CCDC140Q96MF4 163 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 IGHV1-69DA0A0B4J2H0 117 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 GAGE12BA1L429 117 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 IGHV1-69P01742 117 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 FOXE3Q13461 319 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 MRPS16Q9Y3D3 137 aaKnown RBP10.83□□□□□ -0.68
SNCA-204ENST00000394989 SOX21Q9Y651 276 aaPredicted RBP10.83□□□□□ -0.68
SNCA-204ENST00000394989 A8MWL6 223 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 TAX1BP3O14907 124 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 CRIP1P50238 77 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 ATP5L2Q7Z4Y8 100 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 PSG8Q9UQ74 426 aa10.83□□□□□ -0.68
SNCA-204ENST00000394989 CLEC3BP05452 202 aa10.82□□□□□ -0.68
SNCA-204ENST00000394989 COL8A1P27658 744 aa10.82□□□□□ -0.68
SNCA-204ENST00000394989 ZFAND3Q9H8U3 227 aa10.82□□□□□ -0.68
SNCA-204ENST00000394989 IGHV4-38-2P0DP08 117 aa10.82□□□□□ -0.68
SNCA-204ENST00000394989 ATP5J2P56134 94 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms