RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 OOSP1A8MZH6 123 aa10.41□□□□□ -0.74
CCDC3-202ENST00000378839 PMCHL1Q16048 86 aa10.41□□□□□ -0.74
CCDC3-202ENST00000378839 IGHV3OR16-10A0A075B7F0 116 aa10.4□□□□□ -0.74
CCDC3-202ENST00000378839 G3V318 75 aa10.4□□□□□ -0.74
CCDC3-202ENST00000378839 ATP6V0E1O15342 81 aa10.4□□□□□ -0.74
CCDC3-202ENST00000378839 EBLN2Q6P2I7 272 aa10.4□□□□□ -0.74
CCDC3-202ENST00000378839 RBPMS2Q6ZRY4 209 aaKnown RBP10.4□□□□□ -0.74
CCDC3-202ENST00000378839 LAMTOR2Q9Y2Q5 125 aa10.4□□□□□ -0.74
CCDC3-202ENST00000378839 IGHV4-39P01824 125 aa10.4□□□□□ -0.74
CCDC3-202ENST00000378839 DAZAP1Q96EP5 407 aaKnown RBP10.4□□□□□ -0.74
CCDC3-202ENST00000378839 GFRA4Q9GZZ7 299 aa10.4□□□□□ -0.74
CCDC3-202ENST00000378839 UTP20O75691 2785 aaKnown RBP10.4□□□□□ -0.74
CCDC3-202ENST00000378839 TRAV30A0A087WSZ9 112 aa10.4□□□□□ -0.75
CCDC3-202ENST00000378839 GAGE1Q13065 139 aa10.4□□□□□ -0.75
CCDC3-202ENST00000378839 ZNF575Q86XF7 245 aa10.4□□□□□ -0.75
CCDC3-202ENST00000378839 MCRIP2Q9BUT9 160 aaKnown RBP10.4□□□□□ -0.75
CCDC3-202ENST00000378839 SOX21Q9Y651 276 aaPredicted RBP10.4□□□□□ -0.75
CCDC3-202ENST00000378839 IGKV2-40A0A087WW87 121 aaPredicted RBP10.39□□□□□ -0.75
CCDC3-202ENST00000378839 IGKV2D-40P01614 121 aaPredicted RBP10.39□□□□□ -0.75
CCDC3-202ENST00000378839 SAPCD1Q5SSQ6 148 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 C20orf144Q9BQM9 153 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 MAP1AP78559 2803 aaPredicted RBP10.39□□□□□ -0.75
CCDC3-202ENST00000378839 CENPVL3A0A0U1RRI6 287 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 ARMS2P0C7Q2 107 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 CTRLP40313 264 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 ECSCRQ19T08 205 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 LYPD1Q8N2G4 141 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 CRYBG3Q68DQ2 2970 aa10.39□□□□□ -0.75
CCDC3-202ENST00000378839 FAM106CPP0CH98 169 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 RIPPLY3P57055 190 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 RNASEKQ6P5S7 137 aaKnown RBP10.38□□□□□ -0.75
CCDC3-202ENST00000378839 ZNF138P52744 262 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 C15orf32Q32M92 178 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 LINC00173Q6ZV60 143 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 TMUB1Q9BVT8 246 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 GPR183P32249 361 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 ZNF502Q8TBZ5 544 aa10.38□□□□□ -0.75
CCDC3-202ENST00000378839 FAM181BA6NEQ2 426 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 C2orf70A6NJV1 201 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 HAX1O00165 279 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 TMEM219Q86XT9 240 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 CCDC140Q96MF4 163 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 PSMG3-AS1Q96PY0 264 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 VGLL1Q99990 258 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 CLEC5AQ9NY25 188 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 SPTAN1Q13813 2472 aaKnown RBP10.37□□□□□ -0.75
CCDC3-202ENST00000378839 FLNCQ14315 2725 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 NPFFO15130 113 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 S100A7AQ86SG5 101 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 ZFAND3Q9H8U3 227 aa10.37□□□□□ -0.75
CCDC3-202ENST00000378839 CLPSL1A2RUU4 121 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 SNAI2O43623 268 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 GOSR1O95249 250 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 CLEC3BP05452 202 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 ZNF80P51504 273 aaPredicted RBP10.36□□□□□ -0.75
CCDC3-202ENST00000378839 RHOGP84095 191 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 Q8TAT8 98 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 FAM110DQ8TAY7 271 aaPredicted RBP10.36□□□□□ -0.75
CCDC3-202ENST00000378839 IGHV3-66A0A0C4DH42 116 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 FAM231BA6NCW3 169 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 OR4B1Q8NGF8 309 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 PIFOQ8TCI5 191 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 PDE6HQ13956 83 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 NAA38Q9BRA0 125 aaKnown RBP10.36□□□□□ -0.75
CCDC3-202ENST00000378839 THYN1Q9P016 225 aa10.36□□□□□ -0.75
CCDC3-202ENST00000378839 TMSB15BA0A087X1C1 80 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 PRAC2D3DTV9 90 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 M0R2Z0 102 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 CHEK1O14757 476 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 HSBP1O75506 76 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 KLK9Q2XQG4 91 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 LINC00527Q9UJ94 153 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 KLK9Q9UKQ9 250 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 IGHV4-61A0A0C4DH41 118 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 MUC21A0A0G2JKD1 596 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 MUC21A0A140T8X8 626 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 MUC21Q5SSG8 566 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 BRD3OSQ6XYD6 125 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 C5orf56Q8N8D9 126 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 SPOCK3Q9BQ16 436 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 IGSF10Q6WRI0 2623 aa10.35□□□□□ -0.75
CCDC3-202ENST00000378839 IGHV3OR16-13A0A075B7E8 117 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 IGHV3-74A0A0B4J1X5 117 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 ZNF738Q8NE65 137 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 UQCR10Q9UDW1 63 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 RABAC1Q9UI14 185 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 IGHV1-24A0A0C4DH33 117 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 SH2D1AO60880 128 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 TPPP3Q9BW30 176 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 PAX8Q06710 450 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 CLEC19AQ6UXS0 136 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 RNF182Q8N6D2 247 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 PMCHL2Q9BQD1 86 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 NDFIP1Q9BT67 221 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 AAMDCQ9H7C9 122 aa10.34□□□□□ -0.75
CCDC3-202ENST00000378839 IGLC3P0DOY3 106 aa10.33□□□□□ -0.76
CCDC3-202ENST00000378839 PRR25Q96S07 402 aa10.33□□□□□ -0.76
CCDC3-202ENST00000378839 IGHV3-49A0A0A0MS15 119 aa10.33□□□□□ -0.76
CCDC3-202ENST00000378839 A0A1B0GUT8 65 aa10.33□□□□□ -0.76
CCDC3-202ENST00000378839 TMEM213A2RRL7 107 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms