RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 RALYQ9UKM9 306 aaKnown RBP16.58■□□□□ 0.25
UPF3A-202ENST00000375299 ZNF292O60281 2723 aa16.58■□□□□ 0.24
UPF3A-202ENST00000375299 VSTM5A8MXK1 200 aa16.58■□□□□ 0.24
UPF3A-202ENST00000375299 SMKR1H3BMG3 65 aa16.58■□□□□ 0.24
UPF3A-202ENST00000375299 NDUFS7O75251 213 aa16.58■□□□□ 0.24
UPF3A-202ENST00000375299 COX7A1P24310 79 aa16.58■□□□□ 0.24
UPF3A-202ENST00000375299 SELENOKQ9Y6D0 94 aa16.58■□□□□ 0.24
UPF3A-202ENST00000375299 A0A1W2PPM0 123 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 S100A7P31151 101 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 NEGR1Q7Z3B1 354 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 OR5A1Q8NGJ0 315 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 NPFFR1Q9GZQ6 430 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 COX8CQ7Z4L0 72 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 S100A7AQ86SG5 101 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 JKAMPQ9P055 326 aa16.57■□□□□ 0.24
UPF3A-202ENST00000375299 CUL9Q8IWT3 2517 aa16.56■□□□□ 0.24
UPF3A-202ENST00000375299 PRSS57Q6UWY2 283 aa16.56■□□□□ 0.24
UPF3A-202ENST00000375299 BCL6BQ8N143 479 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-202ENST00000375299 DKK2Q9UBU2 259 aa16.56■□□□□ 0.24
UPF3A-202ENST00000375299 SPCS1Q9Y6A9 102 aa16.56■□□□□ 0.24
UPF3A-202ENST00000375299 TWIST1Q15672 202 aa16.56■□□□□ 0.24
UPF3A-202ENST00000375299 RAB1BQ9H0U4 201 aa16.56■□□□□ 0.24
UPF3A-202ENST00000375299 ZGRF1Q86YA3 2104 aa16.55■□□□□ 0.24
UPF3A-202ENST00000375299 IGKV2-40A0A087WW87 121 aaPredicted RBP16.55■□□□□ 0.24
UPF3A-202ENST00000375299 IGKV2D-40P01614 121 aaPredicted RBP16.55■□□□□ 0.24
UPF3A-202ENST00000375299 EGR2P11161 476 aaPredicted RBP16.55■□□□□ 0.24
UPF3A-202ENST00000375299 PIFOQ8TCI5 191 aa16.55■□□□□ 0.24
UPF3A-202ENST00000375299 S4R3C0 116 aa16.55■□□□□ 0.24
UPF3A-202ENST00000375299 ROS1P08922 2347 aa16.55■□□□□ 0.24
UPF3A-202ENST00000375299 CEP250Q9BV73 2442 aa16.54■□□□□ 0.24
UPF3A-202ENST00000375299 GNG7O60262 68 aa16.54■□□□□ 0.24
UPF3A-202ENST00000375299 WFDC3Q8IUB2 231 aa16.54■□□□□ 0.24
UPF3A-202ENST00000375299 PRR25Q96S07 402 aa16.54■□□□□ 0.24
UPF3A-202ENST00000375299 PRRG2O14669 202 aa16.53■□□□□ 0.24
UPF3A-202ENST00000375299 CEACAM3P40198 252 aa16.53■□□□□ 0.24
UPF3A-202ENST00000375299 ATMQ13315 3056 aa16.53■□□□□ 0.24
UPF3A-202ENST00000375299 LY6LH3BQJ8 138 aa16.53■□□□□ 0.24
UPF3A-202ENST00000375299 IGLC6P0CF74 106 aa16.53■□□□□ 0.24
UPF3A-202ENST00000375299 GFRALQ6UXV0 394 aa16.53■□□□□ 0.24
UPF3A-202ENST00000375299 MAP1LC3AQ9H492 121 aa16.52■□□□□ 0.24
UPF3A-202ENST00000375299 FBLL1A6NHQ2 334 aaKnown RBP16.52■□□□□ 0.23
UPF3A-202ENST00000375299 TMEM238C9JI98 176 aa16.52■□□□□ 0.23
UPF3A-202ENST00000375299 E7EQL1 145 aa16.52■□□□□ 0.23
UPF3A-202ENST00000375299 TIMM23O14925 209 aa16.52■□□□□ 0.23
UPF3A-202ENST00000375299 KLF17Q5JT82 389 aaPredicted RBP16.52■□□□□ 0.23
UPF3A-202ENST00000375299 FABP2P12104 132 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 C18orf15Q96N68 181 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 PPIAL4CA0A0B4J2A2 164 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 A0A1W2PRD5 423 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 A0A1W2PRF3 423 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 A0A1W2PRM7 423 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 SHISA9B4DS77 424 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 KALRNO60229 2985 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 PPIAL4GP0DN37 164 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 BMI1P35226 326 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 ZNF80P51504 273 aaPredicted RBP16.51■□□□□ 0.23
UPF3A-202ENST00000375299 BSNQ9UPA5 3926 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 PKDREJQ9NTG1 2253 aa16.51■□□□□ 0.23
UPF3A-202ENST00000375299 LINC01546A6NGU7 62 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 NBR2O15453 112 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 SMIM13P0DJ93 91 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 TM4SF20Q53R12 229 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 PSMG4Q5JS54 123 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 RNF185Q96GF1 192 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 MFAP4P55083 255 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 Q8TAT8 98 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 ZMAT4Q9H898 229 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 HIGD1BQ9P298 99 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 SH3BGRL2Q9UJC5 107 aa16.5■□□□□ 0.23
UPF3A-202ENST00000375299 ADGRG4Q8IZF6 3080 aa16.49■□□□□ 0.23
UPF3A-202ENST00000375299 SAMD5Q5TGI4 173 aa16.49■□□□□ 0.23
UPF3A-202ENST00000375299 ZNF48Q96MX3 618 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-202ENST00000375299 ANKRD11Q6UB99 2663 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-202ENST00000375299 NPIPB5A8MRT5 1133 aa16.49■□□□□ 0.23
UPF3A-202ENST00000375299 ODF1Q14990 250 aa16.49■□□□□ 0.23
UPF3A-202ENST00000375299 MAP1BP46821 2468 aaKnown RBP16.49■□□□□ 0.23
UPF3A-202ENST00000375299 ZZEF1O43149 2961 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 IGKV2D-26A0A0A0MRZ7 120 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 SMIM17P0DL12 118 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 RPL7P18124 248 aaKnown RBP16.48■□□□□ 0.23
UPF3A-202ENST00000375299 GCSHP23434 173 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 FCER1GP30273 86 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 LEPP41159 167 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 SRSF2Q01130 221 aaKnown RBP16.48■□□□□ 0.23
UPF3A-202ENST00000375299 IGLV11-55A0A075B6I3 123 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 FXYD2P54710 66 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 ZNF575Q86XF7 245 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 FANCD2OSQ96PS1 177 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 MSRB1Q9NZV6 116 aa16.48■□□□□ 0.23
UPF3A-202ENST00000375299 F8W735 103 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-202ENST00000375299 VGLL1Q99990 258 aa16.47■□□□□ 0.23
UPF3A-202ENST00000375299 HHLA3Q9XRX5 114 aa16.47■□□□□ 0.23
UPF3A-202ENST00000375299 LYNX1G3V0Z9 82 aa16.46■□□□□ 0.23
UPF3A-202ENST00000375299 NDUFA3O95167 84 aa16.46■□□□□ 0.23
UPF3A-202ENST00000375299 LYNX1P0DP58 116 aa16.46■□□□□ 0.23
UPF3A-202ENST00000375299 CHAC1Q9BUX1 264 aa16.46■□□□□ 0.23
UPF3A-202ENST00000375299 CNFNQ9BYD5 112 aa16.46■□□□□ 0.23
UPF3A-202ENST00000375299 TCF15Q12870 199 aa16.46■□□□□ 0.23
UPF3A-202ENST00000375299 ZNF562Q6V9R5 426 aa16.46■□□□□ 0.23
UPF3A-202ENST00000375299 NXT2Q9NPJ8 142 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms