RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 IGHV4-59P01825 116 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 PMCHL1Q16048 86 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 SPATA45Q537H7 98 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 C5orf17Q8NAS9 161 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 BLNKQ8WV28 456 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 HIGD1CA8MV81 97 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 A8MWL6 223 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 C3orf79P0CE67 100 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 NTF3P20783 257 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 PLP1P60201 277 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 GNG5P63218 68 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 CT83Q5H943 113 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 Q6YL49 198 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 NIT1Q86X76 327 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 SMR3AQ99954 134 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 UQCR10Q9UDW1 63 aa10.28□□□□□ -0.76
SQSTM1-201ENST00000360718 TOMM40O96008 361 aa10.27□□□□□ -0.76
SQSTM1-201ENST00000360718 FAM110DQ8TAY7 271 aaPredicted RBP10.27□□□□□ -0.76
SQSTM1-201ENST00000360718 TMEM190Q8WZ59 177 aa10.27□□□□□ -0.76
SQSTM1-201ENST00000360718 DAZAP1Q96EP5 407 aaKnown RBP10.27□□□□□ -0.76
SQSTM1-201ENST00000360718 YAE1D1Q9NRH1 226 aa10.27□□□□□ -0.76
SQSTM1-201ENST00000360718 MTORP42345 2549 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 IGLV11-55A0A075B6I3 123 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 IGHV3-21A0A0B4J1V1 117 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 I3L2K1 104 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 CTRLP40313 264 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 FAM19A2Q8N3H0 131 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 ALKBH7Q9BT30 221 aaPredicted RBP10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 RPP21Q9H633 154 aaKnown RBP10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 ZNF492Q9P255 531 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 RNF114Q9Y508 228 aa10.27□□□□□ -0.77
SQSTM1-201ENST00000360718 MLST8Q9BVC4 326 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 VPREB3Q9UKI3 123 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 CUBNO60494 3623 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 P01737 135 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 IGHG2P01859 326 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 CAMPP49913 170 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 HBBP68871 147 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 Q6ZS46 218 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 FANCD2OSQ96PS1 177 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 GFRA4Q9GZZ7 299 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 RPH3ALQ9UNE2 315 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 HIGD1AQ9Y241 93 aa10.26□□□□□ -0.77
SQSTM1-201ENST00000360718 TRAV41A0A0B4J266 112 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 A0A1B0GXF2 115 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 M0R2Z0 102 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 TCRAP04437 139 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 COL5A1-AS1Q5SY13 56 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 GDF5OSQ5U4N7 250 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 TXN2Q99757 166 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 PRSS22Q9GZN4 317 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 Q9H3A6 140 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 SETXQ7Z333 2677 aaKnown RBP10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 HIVEP1P15822 2718 aa10.25□□□□□ -0.77
SQSTM1-201ENST00000360718 C20orf202A1L168 122 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 FAM231BA6NCW3 169 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 G3V318 75 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 K7EIM0 57 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 LTAP01374 205 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 GP9P14770 177 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 OTORQ9NRC9 128 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 TMEM14CQ9P0S9 112 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 RNF24Q9Y225 148 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 HOXA3O43365 443 aaPredicted RBP10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 SCGB2A1O75556 95 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 IGF1P05019 195 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 IGLC2P0DOY2 106 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 IGLC3P0DOY3 106 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 CRIP2P52943 208 aaPredicted RBP10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 MFAP4P55083 255 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 BLCAPP62952 87 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 SCGB2A2Q13296 93 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 BATFQ16520 125 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 C21orf62-AS1Q17RA5 79 aa10.24□□□□□ -0.77
SQSTM1-201ENST00000360718 C19orf71A6NCJ1 209 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 FAM181BA6NEQ2 426 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 RNASEKQ6P5S7 137 aaKnown RBP10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 OR2D3Q8NGH3 330 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 TRAV30A0A087WSZ9 112 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 HNRNPA3P51991 378 aaKnown RBP10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 Q6ZN92 141 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 RBPMS2Q6ZRY4 209 aaKnown RBP10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 TCF24Q7RTU0 167 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 SGK494Q96LW2 274 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 SSBP4Q9BWG4 385 aaPredicted RBP10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 LINC00527Q9UJ94 153 aa10.23□□□□□ -0.77
SQSTM1-201ENST00000360718 GNG7O60262 68 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 LYZP61626 148 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 RHOGP84095 191 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 C21orf62Q9NYP8 219 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 ZFP30Q9Y2G7 519 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 NDUFB8O95169 186 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 NPSP0C0P6 89 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 PSG1P11464 419 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 Q56UQ5 140 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 CHCHD1Q96BP2 118 aaKnown RBP10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 DUX5Q96PT3 197 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 NPFFR1Q9GZQ6 430 aa10.22□□□□□ -0.77
SQSTM1-201ENST00000360718 NF1P21359 2839 aa10.21□□□□□ -0.77
SQSTM1-201ENST00000360718 TRBV6-1A0A0K0K1D8 114 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms