RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 HLA-DRB4X5D2U9 266 aa16.3■□□□□ 0.2
SHMT1-203ENST00000354098 A0A0J9YX75 114 aa16.3■□□□□ 0.2
SHMT1-203ENST00000354098 MAP1LC3B2A6NCE7 125 aa16.3■□□□□ 0.2
SHMT1-203ENST00000354098 EBLN2Q6P2I7 272 aa16.3■□□□□ 0.2
SHMT1-203ENST00000354098 MAP1LC3BQ9GZQ8 125 aa16.3■□□□□ 0.2
SHMT1-203ENST00000354098 IGKV3-20P01619 116 aa16.29■□□□□ 0.2
SHMT1-203ENST00000354098 FAM74A1Q5RGS3 127 aa16.29■□□□□ 0.2
SHMT1-203ENST00000354098 IQCF2Q8IXL9 164 aa16.29■□□□□ 0.2
SHMT1-203ENST00000354098 SUN5Q8TC36 379 aa16.29■□□□□ 0.2
SHMT1-203ENST00000354098 Q9H3A6 140 aa16.29■□□□□ 0.2
SHMT1-203ENST00000354098 DPPA3Q6W0C5 159 aa16.28■□□□□ 0.2
SHMT1-203ENST00000354098 OR4B1Q8NGF8 309 aa16.28■□□□□ 0.2
SHMT1-203ENST00000354098 AAMDCQ9H7C9 122 aa16.28■□□□□ 0.2
SHMT1-203ENST00000354098 CLEC5AQ9NY25 188 aa16.28■□□□□ 0.2
SHMT1-203ENST00000354098 SULT1A2P50226 295 aa16.27■□□□□ 0.2
SHMT1-203ENST00000354098 ALKAL2Q6UX46 152 aa16.27■□□□□ 0.19
SHMT1-203ENST00000354098 OR8A1Q8NGG7 326 aa16.27■□□□□ 0.19
SHMT1-203ENST00000354098 SFT2D1Q8WV19 159 aa16.27■□□□□ 0.19
SHMT1-203ENST00000354098 MBD3L1Q8WWY6 194 aa16.27■□□□□ 0.19
SHMT1-203ENST00000354098 A0A1B0GV50 99 aa16.26■□□□□ 0.19
SHMT1-203ENST00000354098 CNN1P51911 297 aaKnown RBP16.26■□□□□ 0.19
SHMT1-203ENST00000354098 HIST1H1AQ02539 215 aaPredicted RBP16.26■□□□□ 0.19
SHMT1-203ENST00000354098 LYPD1Q8N2G4 141 aa16.26■□□□□ 0.19
SHMT1-203ENST00000354098 CSTL1Q9H114 145 aa16.26■□□□□ 0.19
SHMT1-203ENST00000354098 TMEM167BQ9NRX6 74 aa16.26■□□□□ 0.19
SHMT1-203ENST00000354098 KIR2DL5BA0A0G2JN68 375 aa16.25■□□□□ 0.19
SHMT1-203ENST00000354098 KIR2DL5BA0A0G2JPC4 375 aa16.25■□□□□ 0.19
SHMT1-203ENST00000354098 RAB5CP51148 216 aa16.25■□□□□ 0.19
SHMT1-203ENST00000354098 APOC4P55056 127 aa16.25■□□□□ 0.19
SHMT1-203ENST00000354098 KIR2DL5AQ8N109 375 aa16.25■□□□□ 0.19
SHMT1-203ENST00000354098 KIR2DL5BQ8NHK3 375 aa16.25■□□□□ 0.19
SHMT1-203ENST00000354098 MRPL53Q96EL3 112 aaKnown RBP16.25■□□□□ 0.19
SHMT1-203ENST00000354098 PRELID1Q9Y255 219 aa16.25■□□□□ 0.19
SHMT1-203ENST00000354098 PGPA6NDG6 321 aa16.24■□□□□ 0.19
SHMT1-203ENST00000354098 GIG44P09565 113 aaPredicted RBP16.24■□□□□ 0.19
SHMT1-203ENST00000354098 H2AFB1P0C5Y9 115 aa16.24■□□□□ 0.19
SHMT1-203ENST00000354098 OTORQ9NRC9 128 aa16.24■□□□□ 0.19
SHMT1-203ENST00000354098 FXYD7P58549 80 aa16.23■□□□□ 0.19
SHMT1-203ENST00000354098 TM2D3Q9BRN9 247 aa16.23■□□□□ 0.19
SHMT1-203ENST00000354098 SLC35B3Q9H1N7 401 aa16.23■□□□□ 0.19
SHMT1-203ENST00000354098 DUSP14O95147 198 aaKnown RBP16.22■□□□□ 0.19
SHMT1-203ENST00000354098 CA1P00915 261 aaPredicted RBP16.22■□□□□ 0.19
SHMT1-203ENST00000354098 UBE2G2P60604 165 aa16.22■□□□□ 0.19
SHMT1-203ENST00000354098 AMTNQ6UX39 209 aa16.22■□□□□ 0.19
SHMT1-203ENST00000354098 CLUHP3Q96NS8 147 aa16.22■□□□□ 0.19
SHMT1-203ENST00000354098 RETNQ9HD89 108 aa16.22■□□□□ 0.19
SHMT1-203ENST00000354098 YTHDF2Q9Y5A9 579 aaKnown RBP16.22■□□□□ 0.19
SHMT1-203ENST00000354098 A8MTW9 85 aa16.21■□□□□ 0.19
SHMT1-203ENST00000354098 OR10J6PQ8NGY7 276 aa16.21■□□□□ 0.19
SHMT1-203ENST00000354098 NBEAL2Q6ZNJ1 2754 aa16.21■□□□□ 0.19
SHMT1-203ENST00000354098 IGKV2-40A0A087WW87 121 aaPredicted RBP16.21■□□□□ 0.18
SHMT1-203ENST00000354098 IGKV2D-40P01614 121 aaPredicted RBP16.21■□□□□ 0.18
SHMT1-203ENST00000354098 ERCC8Q13216 396 aa16.21■□□□□ 0.18
SHMT1-203ENST00000354098 DEFB135Q30KP9 77 aa16.21■□□□□ 0.18
SHMT1-203ENST00000354098 MORN3Q6PF18 240 aaPredicted RBP16.21■□□□□ 0.18
SHMT1-203ENST00000354098 DNAH9Q9NYC9 4486 aa16.2■□□□□ 0.18
SHMT1-203ENST00000354098 ZNF705EA8MWA4 302 aaPredicted RBP16.2■□□□□ 0.18
SHMT1-203ENST00000354098 GGTLC3B5MD39 225 aa16.2■□□□□ 0.18
SHMT1-203ENST00000354098 UBE2CO00762 179 aa16.2■□□□□ 0.18
SHMT1-203ENST00000354098 SUMO1P63165 101 aaKnown RBP16.2■□□□□ 0.18
SHMT1-203ENST00000354098 CCL20P78556 96 aa16.2■□□□□ 0.18
SHMT1-203ENST00000354098 COL7A1Q02388 2944 aa16.2■□□□□ 0.18
SHMT1-203ENST00000354098 CSN1S1P47710 185 aa16.19■□□□□ 0.18
SHMT1-203ENST00000354098 NUTF2P61970 127 aaKnown RBP16.19■□□□□ 0.18
SHMT1-203ENST00000354098 GNG5P63218 68 aa16.19■□□□□ 0.18
SHMT1-203ENST00000354098 XCL2Q9UBD3 114 aa16.19■□□□□ 0.18
SHMT1-203ENST00000354098 RPH3ALQ9UNE2 315 aa16.19■□□□□ 0.18
SHMT1-203ENST00000354098 A0A1W2PRE2 83 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 FAM74A7A6NL05 159 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 DIRC3C9JPN6 131 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 NPIPB6E9PJ23 425 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 SLC25A5P05141 298 aaKnown RBP16.18■□□□□ 0.18
SHMT1-203ENST00000354098 Q6ZWC4 215 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 CMTM2Q8TAZ6 248 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 RXFP4Q8TDU9 374 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 VGLL1Q99990 258 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 AGPAT4-IT1Q9H0P7 198 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 M0R2Z0 102 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 NHLRC4P0CG21 123 aaPredicted RBP16.18■□□□□ 0.18
SHMT1-203ENST00000354098 CT45A10P0DMU9 189 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 SPATA25Q9BR10 227 aa16.18■□□□□ 0.18
SHMT1-203ENST00000354098 TRAV1-1A0A0B4J248 108 aa16.17■□□□□ 0.18
SHMT1-203ENST00000354098 SPINK13Q1W4C9 94 aa16.17■□□□□ 0.18
SHMT1-203ENST00000354098 OVOL2Q9BRP0 275 aa16.17■□□□□ 0.18
SHMT1-203ENST00000354098 ZMAT4Q9H898 229 aa16.17■□□□□ 0.18
SHMT1-203ENST00000354098 CSNK1G2-AS1Q8NCQ2 148 aa16.16■□□□□ 0.18
SHMT1-203ENST00000354098 PPP1R14DQ9NXH3 145 aa16.16■□□□□ 0.18
SHMT1-203ENST00000354098 PAGE4O60829 102 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 TEX261Q6UWH6 196 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 C9orf47Q6ZRZ4 202 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 GOLT1AQ6ZVE7 132 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 C5orf17Q8NAS9 161 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 RNF183Q96D59 192 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 TGP01266 2768 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 TENM3Q9P273 2699 aa16.15■□□□□ 0.18
SHMT1-203ENST00000354098 SPRY2O43597 315 aa16.14■□□□□ 0.18
SHMT1-203ENST00000354098 RCHY1Q96PM5 261 aa16.14■□□□□ 0.18
SHMT1-203ENST00000354098 EPDR1Q9UM22 224 aa16.14■□□□□ 0.18
SHMT1-203ENST00000354098 KIR3DS1Q14943 382 aa16.14■□□□□ 0.17
SHMT1-203ENST00000354098 CST9LP1Q5W188 147 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms