RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 HIST2H2BEQ16778 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BHQ93079 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BNQ99877 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BMQ99879 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 SLC25A2Q9BXI2 301 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 NOTCH3Q9UM47 2321 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 NDUFA4O00483 81 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 OR11H6Q8NGC7 330 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 PRDM13Q9H4Q3 707 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 Q6ZSR3 168 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 C14orf178Q8N769 122 aaPredicted RBP11.85□□□□□ -0.51
COL17A1-201ENST00000353479 C10orf105Q8TEF2 133 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 LY96Q9Y6Y9 160 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 SHANK1Q9Y566 2161 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 XCL2Q9UBD3 114 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 HAPLN4Q86UW8 402 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 TRBV24-1A0A075B6N3 115 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 ZNF876PQ49A33 203 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 DTX2Q86UW9 622 aa11.85□□□□□ -0.51
COL17A1-201ENST00000353479 CRPP02741 224 aa11.84□□□□□ -0.51
COL17A1-201ENST00000353479 LINC00518Q8N0U6 118 aa11.84□□□□□ -0.51
COL17A1-201ENST00000353479 TRBV19A0A075B6N1 114 aa11.84□□□□□ -0.51
COL17A1-201ENST00000353479 SPINK13Q1W4C9 94 aa11.84□□□□□ -0.51
COL17A1-201ENST00000353479 DPH3P1Q9H4G8 78 aa11.84□□□□□ -0.51
COL17A1-201ENST00000353479 POU2AF1Q16633 256 aa11.84□□□□□ -0.51
COL17A1-201ENST00000353479 TTC9CQ8N5M4 171 aa11.84□□□□□ -0.51
COL17A1-201ENST00000353479 CENPVL3A0A0U1RRI6 287 aa11.83□□□□□ -0.51
COL17A1-201ENST00000353479 ADARB2-AS1A8MUL3 147 aa11.83□□□□□ -0.51
COL17A1-201ENST00000353479 DEFB130BP0DP73 79 aa11.83□□□□□ -0.51
COL17A1-201ENST00000353479 DEFB130AP0DP74 79 aa11.83□□□□□ -0.51
COL17A1-201ENST00000353479 C8orf86Q6ZUL3 223 aa11.83□□□□□ -0.51
COL17A1-201ENST00000353479 GAGE10A6NGK3 116 aa11.83□□□□□ -0.52
COL17A1-201ENST00000353479 A0A087WWL8 130 aa11.83□□□□□ -0.52
COL17A1-201ENST00000353479 ELANEP08246 267 aa11.83□□□□□ -0.52
COL17A1-201ENST00000353479 RPL36AP83881 106 aaKnown RBP11.83□□□□□ -0.52
COL17A1-201ENST00000353479 RPL36ALQ969Q0 106 aaKnown RBP11.83□□□□□ -0.52
COL17A1-201ENST00000353479 MSMPQ1L6U9 139 aa11.83□□□□□ -0.52
COL17A1-201ENST00000353479 TMEM95Q3KNT9 176 aa11.83□□□□□ -0.52
COL17A1-201ENST00000353479 C1orf194Q5T5A4 169 aa11.83□□□□□ -0.52
COL17A1-201ENST00000353479 FAM90A2PQ658T7 463 aa11.83□□□□□ -0.52
COL17A1-201ENST00000353479 FBXL19-AS1Q494R0 122 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 C8orf49Q96NF6 230 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 IGLC1P0CG04 106 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 DOCK11Q5JSL3 2073 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 H3BRN7 92 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 CTAG1AP78358 180 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 LAGE3Q14657 143 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 UBE2DNLQ8IWF7 75 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 CHCHD1Q96BP2 118 aaKnown RBP11.82□□□□□ -0.52
COL17A1-201ENST00000353479 DMRT1Q9Y5R6 373 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 FREM1Q5H8C1 2179 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 SPG11Q96JI7 2443 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 A0A087WX48 190 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 CYYR1Q96J86 154 aa11.82□□□□□ -0.52
COL17A1-201ENST00000353479 MST1LQ2TV78 715 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 TMEM75Q8N9X5 138 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 LOC102724200A0A096LPH7 203 aaPredicted RBP11.81□□□□□ -0.52
COL17A1-201ENST00000353479 COLCA2A8K830 154 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 SSBP2P81877 361 aaPredicted RBP11.81□□□□□ -0.52
COL17A1-201ENST00000353479 MRPS16Q9Y3D3 137 aaKnown RBP11.81□□□□□ -0.52
COL17A1-201ENST00000353479 ARMS2P0C7Q2 107 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 NOTCH2Q04721 2471 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 IGLC7A0M8Q6 106 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 CHTOPQ9Y3Y2 248 aaKnown RBP11.81□□□□□ -0.52
COL17A1-201ENST00000353479 ZNF726P1Q15940 193 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 KLK9Q9UKQ9 250 aa11.81□□□□□ -0.52
COL17A1-201ENST00000353479 GOLGB1Q14789 3259 aaKnown RBP11.8□□□□□ -0.52
COL17A1-201ENST00000353479 DPM2O94777 84 aa11.8□□□□□ -0.52
COL17A1-201ENST00000353479 IFI27L1Q96BM0 104 aa11.8□□□□□ -0.52
COL17A1-201ENST00000353479 SMIM12Q96EX1 92 aa11.8□□□□□ -0.52
COL17A1-201ENST00000353479 RASL11AQ6T310 242 aa11.8□□□□□ -0.52
COL17A1-201ENST00000353479 MUC22E2RYF6 1773 aaPredicted RBP11.79□□□□□ -0.52
COL17A1-201ENST00000353479 PTPRSQ13332 1948 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 RITA1Q96K30 269 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 SMKR1H3BMG3 65 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 ZFP36P26651 326 aaKnown RBP11.79□□□□□ -0.52
COL17A1-201ENST00000353479 THAP8Q8NA92 274 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 VGLL1Q99990 258 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 CEP192Q8TEP8 1941 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 SMIM13P0DJ93 91 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 AMN1Q8IY45 258 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 FNDC4Q9H6D8 234 aaPredicted RBP11.79□□□□□ -0.52
COL17A1-201ENST00000353479 IGHV7-4-1A0A0J9YVY3 117 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 MRPL27Q9P0M9 148 aaKnown RBP11.79□□□□□ -0.52
COL17A1-201ENST00000353479 ARFGEF3Q5TH69 2177 aa11.79□□□□□ -0.52
COL17A1-201ENST00000353479 IGHV3-64A0A075B6Q5 118 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 KNCNA6PVL3 124 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 LYPD6Q86Y78 171 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 CACNA1AO00555 2505 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 GGTLC3B5MD39 225 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 CSTL1Q9H114 145 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 C9JQL5 133 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 H3BUA1 57 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 PFN1P07737 140 aaKnown RBP11.78□□□□□ -0.52
COL17A1-201ENST00000353479 LINC00469Q8N7U9 141 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 LSM4Q9Y4Z0 139 aaKnown RBP11.78□□□□□ -0.52
COL17A1-201ENST00000353479 TRAV12-2A0A075B6T6 113 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 BLCAPP62952 87 aa11.78□□□□□ -0.52
COL17A1-201ENST00000353479 DEFB136Q30KP8 78 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms