RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 PRO1933Q9H354 126 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 MRPS16Q9Y3D3 137 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 MUC22E2RYF6 1773 aaPredicted RBP13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 MALP21145 153 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 FOXE3Q13461 319 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 TMEM170BQ5T4T1 132 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 CHCHD5Q9BSY4 110 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 TPSG1Q9NRR2 321 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 XCL2Q9UBD3 114 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 LINC01549A6NIU2 74 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 ZNF414Q96IQ9 312 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 SRSF1Q07955 248 aaKnown RBP eCLIP13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 PAM16Q9Y3D7 125 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 ATP5L2Q7Z4Y8 100 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 F8P00451 2351 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 LY6G6DO95868 133 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 RPLP1P05386 114 aaKnown RBP13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 SMIM6P0DI80 62 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 DNAH12Q6ZR08 3092 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 PRSS57Q6UWY2 283 aa13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 NXT2Q9NPJ8 142 aaKnown RBP13.03□□□□□ -0.32
SMARCA4-201ENST00000344626 COX6CP09669 75 aa13.02□□□□□ -0.32
SMARCA4-201ENST00000344626 WT1-ASQ06250 92 aa13.02□□□□□ -0.32
SMARCA4-201ENST00000344626 FGF23Q9GZV9 251 aaPredicted RBP13.02□□□□□ -0.32
SMARCA4-201ENST00000344626 IGFL4Q6B9Z1 124 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 NUDT10Q8NFP7 164 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 NUDT11Q96G61 164 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 ORMDL2Q53FV1 153 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 ERASQ7Z444 233 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 VCX2Q9H322 139 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 A0A087WX48 190 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 CLPSL1A2RUU4 121 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 LGALS1P09382 135 aaKnown RBP13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 NPBQ8NG41 125 aa13.02□□□□□ -0.33
SMARCA4-201ENST00000344626 PET117Q6UWS5 81 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 A0A1B0GW64 132 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 A8MXK9 166 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 CDSNQ15517 529 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 IMMP2LQ96T52 175 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 LY96Q9Y6Y9 160 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 IGKV1-39P01597 117 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 IGKV1D-39P04432 117 aa13.01□□□□□ -0.33
SMARCA4-201ENST00000344626 SH2D1AO60880 128 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 IGHV3-53P01767 116 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 JOSD1Q15040 202 aaPredicted RBP13□□□□□ -0.33
SMARCA4-201ENST00000344626 CYSLTR1Q9Y271 337 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 IGHV7-4-1A0A0J9YVY3 117 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 FOSL1P15407 271 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 TCTAP57738 103 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 C18orf15Q96N68 181 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 LMO4P61968 165 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 OR11H2Q8NH07 326 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 Q8TAT8 98 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 TMEM160Q9NX00 188 aa13□□□□□ -0.33
SMARCA4-201ENST00000344626 IGHV4-31P0DP07 118 aa12.99□□□□□ -0.33
SMARCA4-201ENST00000344626 C9orf66Q5T8R8 295 aa12.99□□□□□ -0.33
SMARCA4-201ENST00000344626 ADARB2-AS1A8MUL3 147 aa12.99□□□□□ -0.33
SMARCA4-201ENST00000344626 CD5LO43866 347 aa12.99□□□□□ -0.33
SMARCA4-201ENST00000344626 FOXC2Q99958 501 aa12.99□□□□□ -0.33
SMARCA4-201ENST00000344626 KRTAP10-9P60411 292 aa12.98□□□□□ -0.33
SMARCA4-201ENST00000344626 TMEM86BQ8N661 226 aa12.98□□□□□ -0.33
SMARCA4-201ENST00000344626 HOXA5P20719 270 aa12.98□□□□□ -0.33
SMARCA4-201ENST00000344626 TOMM7Q9P0U1 55 aa12.98□□□□□ -0.33
SMARCA4-201ENST00000344626 DPH3P1Q9H4G8 78 aa12.98□□□□□ -0.33
SMARCA4-201ENST00000344626 DNAJC9-AS1A6NH13 148 aa12.98□□□□□ -0.33
SMARCA4-201ENST00000344626 SRSF2Q01130 221 aaKnown RBP12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 HIST1H4GQ99525 98 aa12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 PGPEP1LA6NFU8 196 aa12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 SMIM12Q96EX1 92 aa12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 MRAP2Q96G30 205 aa12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 A0A0C4DFX4 3053 aa12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 HINT1P49773 126 aaPredicted RBP12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 SPATA45Q537H7 98 aa12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 H3BRN7 92 aa12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 CA1P00915 261 aaPredicted RBP12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 HOXD3P31249 432 aaPredicted RBP12.97□□□□□ -0.33
SMARCA4-201ENST00000344626 DAD1P61803 113 aa12.96□□□□□ -0.33
SMARCA4-201ENST00000344626 TMEM75Q8N9X5 138 aa12.96□□□□□ -0.33
SMARCA4-201ENST00000344626 THAP8Q8NA92 274 aa12.96□□□□□ -0.33
SMARCA4-201ENST00000344626 PMCHL2Q9BQD1 86 aa12.96□□□□□ -0.33
SMARCA4-201ENST00000344626 TMEM14CQ9P0S9 112 aa12.96□□□□□ -0.33
SMARCA4-201ENST00000344626 ST6GALNAC6Q969X2 333 aa12.96□□□□□ -0.33
SMARCA4-201ENST00000344626 GNB1LQ9BYB4 327 aa12.96□□□□□ -0.33
SMARCA4-201ENST00000344626 TRBV19A0A075B6N1 114 aa12.96□□□□□ -0.34
SMARCA4-201ENST00000344626 GTF2H5Q6ZYL4 71 aa12.96□□□□□ -0.34
SMARCA4-201ENST00000344626 ERCC8Q13216 396 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 LYZL1Q6UWQ5 148 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 Q86TA4 180 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 CD28P10747 220 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 PKIAP61925 76 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 FAM90A2PQ658T7 463 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 RANBP2P49792 3224 aaKnown RBP12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 IGLC1P0CG04 106 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 DNLZQ5SXM8 178 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 SLC25A34Q6PIV7 304 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 SSBP4Q9BWG4 385 aaPredicted RBP12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 SIRPDQ9H106 197 aa12.95□□□□□ -0.34
SMARCA4-201ENST00000344626 F5H768 121 aa12.94□□□□□ -0.34
SMARCA4-201ENST00000344626 TCF23Q7RTU1 214 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms