RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ABCA2Q9BZC7 2435 aa15.08■□□□□ 0
COL9A3-201ENST00000343916 IGKV2-40A0A087WW87 121 aaPredicted RBP15.07■□□□□ 0
COL9A3-201ENST00000343916 FAM231BA6NCW3 169 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 IGKV2D-40P01614 121 aaPredicted RBP15.07■□□□□ 0
COL9A3-201ENST00000343916 PDE6HQ13956 83 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 EBLN2Q6P2I7 272 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 MAP1AP78559 2803 aaPredicted RBP15.07■□□□□ 0
COL9A3-201ENST00000343916 SPG11Q96JI7 2443 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 FAM181BA6NEQ2 426 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 CHEK1O14757 476 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 IGHV4-39P01824 125 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 ARMS2P0C7Q2 107 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 S100A7AQ86SG5 101 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 KLHDC1Q8N7A1 406 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 TPPP3Q9BW30 176 aa15.07■□□□□ 0
COL9A3-201ENST00000343916 CFAP46Q8IYW2 2715 aa15.06■□□□□ 0
COL9A3-201ENST00000343916 HLA-DMBP28068 263 aa15.06■□□□□ 0
COL9A3-201ENST00000343916 TSPOP30536 169 aa15.06■□□□□ 0
COL9A3-201ENST00000343916 RHOGP84095 191 aa15.06■□□□□ 0
COL9A3-201ENST00000343916 RELQ04864 619 aaPredicted RBP15.06■□□□□ 0
COL9A3-201ENST00000343916 RABAC1Q9UI14 185 aa15.06■□□□□ 0
COL9A3-201ENST00000343916 SMAD5-AS1Q9Y6J3 95 aa15.06■□□□□ 0
COL9A3-201ENST00000343916 CENPVL3A0A0U1RRI6 287 aa15.05■□□□□ 0
COL9A3-201ENST00000343916 NPFFO15130 113 aa15.05■□□□□ 0
COL9A3-201ENST00000343916 RPL7P18124 248 aaKnown RBP15.05■□□□□ 0
COL9A3-201ENST00000343916 C21orf62-AS1Q17RA5 79 aa15.05■□□□□ 0
COL9A3-201ENST00000343916 FAM110DQ8TAY7 271 aaPredicted RBP15.05■□□□□ 0
COL9A3-201ENST00000343916 CLEC3BP05452 202 aa15.05■□□□□ -0
COL9A3-201ENST00000343916 TMEM219Q86XT9 240 aa15.05■□□□□ -0
COL9A3-201ENST00000343916 HAX1O00165 279 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 CSN1S1P47710 185 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 SPATA12Q7Z6I5 190 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 ZNF502Q8TBZ5 544 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 CLEC5AQ9NY25 188 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 IGSF10Q6WRI0 2623 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 TMSB15BA0A087X1C1 80 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 LOC102724200A0A096LPH7 203 aaPredicted RBP15.04■□□□□ -0
COL9A3-201ENST00000343916 A0A1B0GUT8 65 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 Q8TAT8 98 aa15.04■□□□□ -0
COL9A3-201ENST00000343916 CT45A10P0DMU9 189 aa15.03■□□□□ -0
COL9A3-201ENST00000343916 TP73-AS1Q9UF72 201 aa15.03■□□□□ -0
COL9A3-201ENST00000343916 IGHV3-66A0A0C4DH42 116 aa15.03■□□□□ -0
COL9A3-201ENST00000343916 ZNF138P52744 262 aa15.03■□□□□ -0
COL9A3-201ENST00000343916 PSG9Q00887 426 aa15.03■□□□□ -0
COL9A3-201ENST00000343916 IGLL1P15814 213 aa15.02■□□□□ -0
COL9A3-201ENST00000343916 CLEC19AQ6UXS0 136 aa15.02■□□□□ -0
COL9A3-201ENST00000343916 IGHV3OR16-13A0A075B7E8 117 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 TRAV9-2A0A087WT02 112 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 IGHV3-74A0A0B4J1X5 117 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 SCGB2A1O75556 95 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 IGHG4P01861 327 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 BRD3OSQ6XYD6 125 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 CCDC140Q96MF4 163 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 CBY1Q9Y3M2 126 aa15.02□□□□□ -0.01
COL9A3-201ENST00000343916 C20orf202A1L168 122 aa15.01□□□□□ -0.01
COL9A3-201ENST00000343916 C2orf70A6NJV1 201 aa15.01□□□□□ -0.01
COL9A3-201ENST00000343916 VGLL1Q99990 258 aa15.01□□□□□ -0.01
COL9A3-201ENST00000343916 LINC00527Q9UJ94 153 aa15.01□□□□□ -0.01
COL9A3-201ENST00000343916 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.01□□□□□ -0.01
COL9A3-201ENST00000343916 CCL25O15444 150 aa15.01□□□□□ -0.01
COL9A3-201ENST00000343916 USP24Q9UPU5 2620 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 CSMD2Q7Z408 3487 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 TMEM190Q8WZ59 177 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 NDFIP1Q9BT67 221 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 ZFAND3Q9H8U3 227 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 MUC21A0A0G2JKD1 596 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 MUC21A0A140T8X8 626 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 SH2D1AO60880 128 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 CSN3P07498 182 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 PTTG1IPP53801 180 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 MUC21Q5SSG8 566 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 C5orf56Q8N8D9 126 aa15□□□□□ -0.01
COL9A3-201ENST00000343916 IGHV4-61A0A0C4DH41 118 aa14.99□□□□□ -0.01
COL9A3-201ENST00000343916 LINC00173Q6ZV60 143 aa14.99□□□□□ -0.01
COL9A3-201ENST00000343916 PRR25Q96S07 402 aa14.99□□□□□ -0.01
COL9A3-201ENST00000343916 MRPS16Q9Y3D3 137 aaKnown RBP14.99□□□□□ -0.01
COL9A3-201ENST00000343916 IGHV3-49A0A0A0MS15 119 aa14.99□□□□□ -0.01
COL9A3-201ENST00000343916 IGHV1-24A0A0C4DH33 117 aa14.99□□□□□ -0.01
COL9A3-201ENST00000343916 FLNCQ14315 2725 aa14.99□□□□□ -0.01
COL9A3-201ENST00000343916 CELSR2Q9HCU4 2923 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 TRAV40A0A0B4J280 105 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 RIGQ13278 110 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 RNF182Q8N6D2 247 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 ORAOV1Q8WV07 137 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 CRYBG3Q68DQ2 2970 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 ZNF207O43670 478 aaKnown RBP14.98□□□□□ -0.01
COL9A3-201ENST00000343916 BUB3O43684 328 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 ZNF80P51504 273 aaPredicted RBP14.98□□□□□ -0.01
COL9A3-201ENST00000343916 FAM162BQ5T6X4 162 aa14.98□□□□□ -0.01
COL9A3-201ENST00000343916 SERTM2A0A1B0GWG4 89 aa14.97□□□□□ -0.01
COL9A3-201ENST00000343916 CLPSL1A2RUU4 121 aa14.97□□□□□ -0.01
COL9A3-201ENST00000343916 TMEM189A5PLL7 270 aa14.97□□□□□ -0.01
COL9A3-201ENST00000343916 LYZL1Q6UWQ5 148 aa14.97□□□□□ -0.01
COL9A3-201ENST00000343916 TMEM213A2RRL7 107 aa14.97□□□□□ -0.01
COL9A3-201ENST00000343916 PAX8Q06710 450 aa14.97□□□□□ -0.01
COL9A3-201ENST00000343916 TMEM70Q9BUB7 260 aa14.97□□□□□ -0.01
COL9A3-201ENST00000343916 CHCHD1Q96BP2 118 aaKnown RBP14.96□□□□□ -0.01
COL9A3-201ENST00000343916 CCL19Q99731 98 aa14.96□□□□□ -0.01
COL9A3-201ENST00000343916 COX11Q9Y6N1 276 aa14.96□□□□□ -0.01
COL9A3-201ENST00000343916 PRAC2D3DTV9 90 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms