RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 J3KRW8 73 aa11.53□□□□□ -0.56
HDDC2-201ENST00000318787 PRM2P04554 102 aa11.53□□□□□ -0.56
HDDC2-201ENST00000318787 IGLC2P0DOY2 106 aa11.53□□□□□ -0.56
HDDC2-201ENST00000318787 PYYP10082 97 aa11.53□□□□□ -0.56
HDDC2-201ENST00000318787 HTN3P15516 51 aa11.53□□□□□ -0.56
HDDC2-201ENST00000318787 FAM222AQ5U5X8 452 aa11.53□□□□□ -0.56
HDDC2-201ENST00000318787 PARD6GQ9BYG4 376 aaPredicted RBP11.53□□□□□ -0.56
HDDC2-201ENST00000318787 MBD2Q9UBB5 411 aa11.53□□□□□ -0.56
HDDC2-201ENST00000318787 YTHDF2Q9Y5A9 579 aaKnown RBP11.53□□□□□ -0.56
HDDC2-201ENST00000318787 IGHV4-4A0A075B6R2 117 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 PRAC2D3DTV9 90 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 C17orf112F2Z3M2 114 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 CRXO43186 299 aaPredicted RBP11.52□□□□□ -0.57
HDDC2-201ENST00000318787 GUK1Q16774 197 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 LINC01587Q99440 93 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 ATP5SQ99766 215 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 RNF126Q9BV68 326 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 WDR61Q9GZS3 305 aaKnown RBP11.52□□□□□ -0.57
HDDC2-201ENST00000318787 ZNF586Q9NXT0 402 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 TIMM9Q9Y5J7 89 aa11.52□□□□□ -0.57
HDDC2-201ENST00000318787 RPL12P30050 165 aaKnown RBP11.51□□□□□ -0.57
HDDC2-201ENST00000318787 RPP25LQ8N5L8 163 aaKnown RBP11.51□□□□□ -0.57
HDDC2-201ENST00000318787 NIPSNAP3BQ9BS92 247 aa11.51□□□□□ -0.57
HDDC2-201ENST00000318787 KCNIP2Q9NS61 270 aa11.51□□□□□ -0.57
HDDC2-201ENST00000318787 HSPB11Q9Y547 144 aa11.51□□□□□ -0.57
HDDC2-201ENST00000318787 PTTG1O95997 202 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 IFNA5P01569 189 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 CDKN1BP46527 198 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 MIR17HGQ75NE6 70 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 SCGB1C1Q8TD33 95 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 CHAC2Q8WUX2 184 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 SAT2Q96F10 170 aaPredicted RBP11.5□□□□□ -0.57
HDDC2-201ENST00000318787 DKK2Q9UBU2 259 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 APLNQ9ULZ1 77 aa11.5□□□□□ -0.57
HDDC2-201ENST00000318787 TEX48A0A1B0GUV7 120 aa11.49□□□□□ -0.57
HDDC2-201ENST00000318787 DAD1P61803 113 aa11.49□□□□□ -0.57
HDDC2-201ENST00000318787 LGALS9CQ6DKI2 356 aa11.49□□□□□ -0.57
HDDC2-201ENST00000318787 SLC25A2Q9BXI2 301 aa11.49□□□□□ -0.57
HDDC2-201ENST00000318787 MED28Q9H204 178 aa11.49□□□□□ -0.57
HDDC2-201ENST00000318787 BIRC6Q9NR09 4857 aa11.49□□□□□ -0.57
HDDC2-201ENST00000318787 TRBV19A0A075B6N1 114 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 M0R3E3 92 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 OR10J4P0C629 311 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 HIST1H1EP10412 219 aaKnown RBP11.48□□□□□ -0.57
HDDC2-201ENST00000318787 TCTAP57738 103 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 KIR3DS1Q14943 382 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 FFAR4Q5NUL3 377 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 EXOC3-AS1Q8N2X6 119 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 AAMDCQ9H7C9 122 aa11.48□□□□□ -0.57
HDDC2-201ENST00000318787 OR7C2O60412 319 aa11.47□□□□□ -0.57
HDDC2-201ENST00000318787 AZU1P20160 251 aa11.47□□□□□ -0.57
HDDC2-201ENST00000318787 TSPOP30536 169 aa11.47□□□□□ -0.57
HDDC2-201ENST00000318787 FAM122CQ6P4D5 195 aa11.47□□□□□ -0.57
HDDC2-201ENST00000318787 OR51M1Q9H341 326 aa11.47□□□□□ -0.57
HDDC2-201ENST00000318787 TMEM14CQ9P0S9 112 aa11.47□□□□□ -0.57
HDDC2-201ENST00000318787 DEFB130BP0DP73 79 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 DEFB130AP0DP74 79 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 ERCC8Q13216 396 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 ICAM4Q14773 271 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 FCN2Q15485 313 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 TMEM256Q8N2U0 113 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 NDUFAF3Q9BU61 184 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 PAXXQ9BUH6 204 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 MRPL32Q9BYC8 188 aaKnown RBP11.46□□□□□ -0.57
HDDC2-201ENST00000318787 FUT9Q9Y231 359 aa11.46□□□□□ -0.57
HDDC2-201ENST00000318787 ZNF253O75346 499 aa11.45□□□□□ -0.58
HDDC2-201ENST00000318787 NDUFB4O95168 129 aa11.45□□□□□ -0.58
HDDC2-201ENST00000318787 LEPP41159 167 aa11.45□□□□□ -0.58
HDDC2-201ENST00000318787 GFI1BQ5VTD9 330 aa11.45□□□□□ -0.58
HDDC2-201ENST00000318787 TRAV12-3A0A0B4J271 114 aa11.44□□□□□ -0.58
HDDC2-201ENST00000318787 EIF3GO75821 320 aaKnown RBP eCLIP11.44□□□□□ -0.58
HDDC2-201ENST00000318787 NBEAP1P0C6P0 100 aa11.44□□□□□ -0.58
HDDC2-201ENST00000318787 CT45A10P0DMU9 189 aa11.44□□□□□ -0.58
HDDC2-201ENST00000318787 TAS2R60P59551 318 aa11.44□□□□□ -0.58
HDDC2-201ENST00000318787 FAM167A-AS1Q96KT0 104 aa11.44□□□□□ -0.58
HDDC2-201ENST00000318787 PGPEP1Q9NXJ5 209 aa11.44□□□□□ -0.58
HDDC2-201ENST00000318787 KMT2AQ03164 3969 aa11.44□□□□□ -0.58
HDDC2-201ENST00000318787 IGKV2-40A0A087WW87 121 aaPredicted RBP11.43□□□□□ -0.58
HDDC2-201ENST00000318787 NPIPB6E9PJ23 425 aa11.43□□□□□ -0.58
HDDC2-201ENST00000318787 IGKV2D-40P01614 121 aaPredicted RBP11.43□□□□□ -0.58
HDDC2-201ENST00000318787 UBE2L3P68036 154 aaKnown RBP11.43□□□□□ -0.58
HDDC2-201ENST00000318787 PDE6HQ13956 83 aa11.43□□□□□ -0.58
HDDC2-201ENST00000318787 RNF141Q8WVD5 230 aa11.43□□□□□ -0.58
HDDC2-201ENST00000318787 C16orf74Q96GX8 76 aa11.43□□□□□ -0.58
HDDC2-201ENST00000318787 WFDC1Q9HC57 220 aa11.43□□□□□ -0.58
HDDC2-201ENST00000318787 PRELID1Q9Y255 219 aa11.43□□□□□ -0.58
HDDC2-201ENST00000318787 H7BYZ3 331 aa11.42□□□□□ -0.58
HDDC2-201ENST00000318787 CCDC28AQ8IWP9 274 aa11.42□□□□□ -0.58
HDDC2-201ENST00000318787 MRPL53Q96EL3 112 aaKnown RBP11.42□□□□□ -0.58
HDDC2-201ENST00000318787 PHYHIPLQ96FC7 376 aa11.42□□□□□ -0.58
HDDC2-201ENST00000318787 LYRM9A8MSI8 78 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 TAS2R45P59539 299 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 RANP62826 216 aaKnown RBP11.41□□□□□ -0.58
HDDC2-201ENST00000318787 KHDC3LQ587J8 217 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 UBE2DNLQ8IWF7 75 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 FXYD5Q96DB9 178 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 NOP10Q9NPE3 64 aaKnown RBP11.41□□□□□ -0.58
HDDC2-201ENST00000318787 A0A1W2PPV4 95 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 RGS21Q2M5E4 152 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 ACOT6Q3I5F7 207 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms