RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 SLC17A3O00476 420 aa12.56□□□□□ -0.4
TPM1-203ENST00000317516 ZNF253O75346 499 aa12.56□□□□□ -0.4
TPM1-203ENST00000317516 UPK1BO75841 260 aa12.56□□□□□ -0.4
TPM1-203ENST00000317516 FGF7P21781 194 aa12.56□□□□□ -0.4
TPM1-203ENST00000317516 LGALS9BQ3B8N2 356 aa12.56□□□□□ -0.4
TPM1-203ENST00000317516 CCDC28AQ8IWP9 274 aa12.56□□□□□ -0.4
TPM1-203ENST00000317516 SLC25A31Q9H0C2 315 aa12.56□□□□□ -0.4
TPM1-203ENST00000317516 CBY3A6NI87 242 aa12.55□□□□□ -0.4
TPM1-203ENST00000317516 M0R2N4 97 aa12.55□□□□□ -0.4
TPM1-203ENST00000317516 PRAF2O60831 178 aa12.55□□□□□ -0.4
TPM1-203ENST00000317516 ATP5G1P05496 136 aa12.55□□□□□ -0.4
TPM1-203ENST00000317516 PRB4P10163 310 aaPredicted RBP12.55□□□□□ -0.4
TPM1-203ENST00000317516 ATP5G3P48201 142 aa12.55□□□□□ -0.4
TPM1-203ENST00000317516 CYCSP99999 105 aaKnown RBP12.55□□□□□ -0.4
TPM1-203ENST00000317516 PLAC8L1A1L4L8 177 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 PRAC2D3DTV9 90 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 E5RGE8 158 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 F5H768 121 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 LEPP41159 167 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 FCN2Q15485 313 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 TMEM263Q8WUH6 116 aaKnown RBP12.54□□□□□ -0.4
TPM1-203ENST00000317516 NMES1Q9C002 83 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 ZNF586Q9NXT0 402 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 TMEM14CQ9P0S9 112 aa12.54□□□□□ -0.4
TPM1-203ENST00000317516 TRBV19A0A075B6N1 114 aa12.53□□□□□ -0.4
TPM1-203ENST00000317516 HIST1H1EP10412 219 aaKnown RBP12.53□□□□□ -0.4
TPM1-203ENST00000317516 FAM3BP58499 235 aaPredicted RBP12.53□□□□□ -0.4
TPM1-203ENST00000317516 MRPL53Q96EL3 112 aaKnown RBP12.53□□□□□ -0.4
TPM1-203ENST00000317516 ODF3Q96PU9 254 aa12.53□□□□□ -0.4
TPM1-203ENST00000317516 ATG101Q9BSB4 218 aa12.53□□□□□ -0.4
TPM1-203ENST00000317516 NPCDR1Q9BY65 106 aa12.53□□□□□ -0.4
TPM1-203ENST00000317516 PRELID1Q9Y255 219 aa12.53□□□□□ -0.4
TPM1-203ENST00000317516 TIMM9Q9Y5J7 89 aa12.53□□□□□ -0.4
TPM1-203ENST00000317516 INMT-MINDY4F8WBC2 141 aa12.52□□□□□ -0.41
TPM1-203ENST00000317516 SIX6O95475 246 aa12.52□□□□□ -0.41
TPM1-203ENST00000317516 NHLH2Q02577 135 aa12.52□□□□□ -0.41
TPM1-203ENST00000317516 PDE6HQ13956 83 aa12.52□□□□□ -0.41
TPM1-203ENST00000317516 OR5C1Q8NGR4 320 aa12.52□□□□□ -0.41
TPM1-203ENST00000317516 RNASE8Q8TDE3 154 aaKnown RBP12.52□□□□□ -0.41
TPM1-203ENST00000317516 NOP10Q9NPE3 64 aaKnown RBP12.52□□□□□ -0.41
TPM1-203ENST00000317516 VPS13DQ5THJ4 4388 aa12.52□□□□□ -0.41
TPM1-203ENST00000317516 IGLV2-18A0A075B6J9 118 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 A6NHS1 94 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 NPIPB6E9PJ23 425 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 CT45A10P0DMU9 189 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 LRRC37A5PQ49AS3 106 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 SOHLH1Q5JUK2 328 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 GFI1BQ5VTD9 330 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 PARD6GQ9BYG4 376 aaPredicted RBP12.51□□□□□ -0.41
TPM1-203ENST00000317516 AAMDCQ9H7C9 122 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 KCNIP2Q9NS61 270 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 PTTG2Q9NZH5 202 aa12.51□□□□□ -0.41
TPM1-203ENST00000317516 KIR3DS1Q14943 382 aa12.5□□□□□ -0.41
TPM1-203ENST00000317516 THAP6Q8TBB0 222 aa12.5□□□□□ -0.41
TPM1-203ENST00000317516 LINC00477Q96M19 166 aa12.5□□□□□ -0.41
TPM1-203ENST00000317516 FRAS1Q86XX4 4008 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 PRSS29PA6NIE9 313 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 SNURFLB1AK76 121 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 J3KRW8 73 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 NUDT3O95989 172 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 DEFA1P59665 94 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 DEFA3P59666 94 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 PYGO2Q9BRQ0 406 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 OR5AC2Q9NZP5 309 aa12.49□□□□□ -0.41
TPM1-203ENST00000317516 TRAV12-3A0A0B4J271 114 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 C17orf112F2Z3M2 114 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 SLC25A5P05141 298 aaKnown RBP12.48□□□□□ -0.41
TPM1-203ENST00000317516 PYYP10082 97 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 CCL18P55774 89 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 CLINT1Q14677 625 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 Q6ZR54 194 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 BLNKQ8WV28 456 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 MARVELD1Q9BSK0 173 aa12.48□□□□□ -0.41
TPM1-203ENST00000317516 M0R3E3 92 aa12.47□□□□□ -0.41
TPM1-203ENST00000317516 RTL8CO15255 209 aa12.47□□□□□ -0.41
TPM1-203ENST00000317516 NDUFB4O95168 129 aa12.47□□□□□ -0.41
TPM1-203ENST00000317516 PET100P0DJ07 73 aa12.47□□□□□ -0.41
TPM1-203ENST00000317516 IFITM3Q01628 133 aa12.47□□□□□ -0.41
TPM1-203ENST00000317516 GCSAMLQ5JQS6 135 aa12.47□□□□□ -0.41
TPM1-203ENST00000317516 WDR61Q9GZS3 305 aaKnown RBP12.47□□□□□ -0.41
TPM1-203ENST00000317516 H0YIZ8 118 aa12.46□□□□□ -0.41
TPM1-203ENST00000317516 SSNA1O43805 119 aa12.46□□□□□ -0.41
TPM1-203ENST00000317516 NBEAP1P0C6P0 100 aa12.46□□□□□ -0.41
TPM1-203ENST00000317516 OR5I1Q13606 314 aa12.46□□□□□ -0.41
TPM1-203ENST00000317516 PPP1R1CQ8WVI7 109 aa12.46□□□□□ -0.41
TPM1-203ENST00000317516 SLC25A2Q9BXI2 301 aa12.46□□□□□ -0.41
TPM1-203ENST00000317516 MRPL32Q9BYC8 188 aaKnown RBP12.46□□□□□ -0.41
TPM1-203ENST00000317516 OR51M1Q9H341 326 aa12.46□□□□□ -0.41
TPM1-203ENST00000317516 DNAH10Q8IVF4 4471 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 C7orf71A4D174 169 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 ERCC8Q13216 396 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 ICAM4Q14773 271 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 C1orf134Q5TEV5 83 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 MIR17HGQ75NE6 70 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 EXOC3-AS1Q8N2X6 119 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 LINC00612Q8N6U2 182 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 AGPAT4-IT1Q9H0P7 198 aa12.45□□□□□ -0.42
TPM1-203ENST00000317516 GAGE12BA1L429 117 aa12.44□□□□□ -0.42
TPM1-203ENST00000317516 GAGE7O76087 117 aa12.44□□□□□ -0.42
TPM1-203ENST00000317516 NMBP08949 121 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms