RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 IGHV2-26A0A0B4J1V2 119 aa7.16□□□□□ -1.26
USF3-201ENST00000316407 TMEM258P61165 79 aa7.16□□□□□ -1.26
USF3-201ENST00000316407 PCOLCEQ15113 449 aa7.16□□□□□ -1.26
USF3-201ENST00000316407 COLCA1Q6ZS62 124 aa7.16□□□□□ -1.26
USF3-201ENST00000316407 FDCSPQ8NFU4 85 aa7.16□□□□□ -1.26
USF3-201ENST00000316407 PFN2P35080 140 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 PRCDQ00LT1 54 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 GLI3P10071 1580 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 IL17RELQ6ZVW7 336 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 TMEM243Q9BU79 118 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 COX8AP10176 69 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 SLC25A45Q8N413 288 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 HLA-DRB4P13762 266 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 HLA-DRB4X5D2U9 266 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 RNF144BQ7Z419 303 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 DSCR8Q96T75 97 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 PTPRBP23467 1997 aa7.15□□□□□ -1.26
USF3-201ENST00000316407 PRSS29PA6NIE9 313 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 IGKV1-5P01602 117 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 RASL10AQ92737 203 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 SPANXA1Q9NS26 97 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 J3KT08 172 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 LTBRP36941 435 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 FOXG1P55316 489 aaPredicted RBP7.15□□□□□ -1.27
USF3-201ENST00000316407 TDRG1Q3Y452 100 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 SPATA25Q9BR10 227 aa7.15□□□□□ -1.27
USF3-201ENST00000316407 EGR2P11161 476 aaPredicted RBP7.14□□□□□ -1.27
USF3-201ENST00000316407 SYNJ2BPP57105 145 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 FAM236AA0A1B0GUQ0 79 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 FAM236BA0A1B0GV22 79 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 IGHG3P01860 377 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 UBL5Q9BZL1 73 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 LYNX1G3V0Z9 82 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 LYNX1P0DP58 116 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 TRGV11A0A075B6L2 103 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 VDAC2P45880 294 aaPredicted RBP7.14□□□□□ -1.27
USF3-201ENST00000316407 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.14□□□□□ -1.27
USF3-201ENST00000316407 MST1LQ2TV78 715 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 A0A087WX48 190 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 LINC01559Q495D7 138 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 A0A1W2PPI3 338 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 DKK1O94907 266 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 WBP1Q96G27 269 aa7.14□□□□□ -1.27
USF3-201ENST00000316407 BRWD3Q6RI45 1802 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 VCYO14598 125 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 NMSQ5H8A3 153 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 IGHV2-5P01817 119 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 CFHR3Q02985 330 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 PAX8Q06710 450 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 FAM27E3Q08E93 113 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 OR11H6Q8NGC7 330 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 KLHDC3Q9BQ90 382 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 VWC2Q2TAL6 325 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 Q86TA4 180 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 Q8NFD4 153 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 IGHV3-16A0A0C4DH30 117 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 LINC00473A8K010 186 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 YPEL1O60688 119 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 RPL35AP18077 110 aaKnown RBP7.13□□□□□ -1.27
USF3-201ENST00000316407 CSRP3P50461 194 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 Q0VG73 95 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 YPEL2Q96QA6 119 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 TRAV12-2A0A075B6T6 113 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 TRAV26-1A0A087WT03 109 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 B9A039 149 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 NDUFS5O43920 106 aa7.13□□□□□ -1.27
USF3-201ENST00000316407 CUL9Q8IWT3 2517 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 A0A0U1RQV1 116 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 TMEM30BQ3MIR4 351 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 LTBP4Q8N2S1 1624 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 PLXNA4Q9HCM2 1894 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 IGHV1-2P23083 117 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 MRPL51Q4U2R6 128 aaKnown RBP7.12□□□□□ -1.27
USF3-201ENST00000316407 IGHG2P01859 326 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 MRPL35Q9NZE8 188 aaKnown RBP7.12□□□□□ -1.27
USF3-201ENST00000316407 HLA-DMBP28068 263 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 NSUN5P1Q3KNT7 163 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 IGHV4-4A0A075B6R2 117 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 MESP1Q9BRJ9 268 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 PRO1854Q9UHT4 67 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 M0R1W7 72 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 A0A1B0GX51 115 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 FAM90A9PA6NNJ1 464 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 AHRRA9YTQ3 701 aa7.12□□□□□ -1.27
USF3-201ENST00000316407 C5orf63A6NC05 138 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 WDR83OSQ9Y284 106 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 SONP18583 2426 aaKnown RBP7.11□□□□□ -1.27
USF3-201ENST00000316407 STPG1Q5TH74 334 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 PCP2Q8IVA1 136 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 DKK2Q9UBU2 259 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 IGKV1-16P04430 117 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 SSC4DQ8WTU2 575 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 CEP192Q8TEP8 1941 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 GAS1P54826 345 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 WFDC9Q8NEX5 89 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 WDR90Q96KV7 1748 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 IGKV3D-7A0A0C4DH55 119 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 NBL1P41271 181 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 ZIC4Q8N9L1 334 aa7.11□□□□□ -1.27
USF3-201ENST00000316407 ITGBL1O95965 494 aaPredicted RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms