RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C16orf47Q6ZP98 133 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 NRTNQ99748 197 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 KLF16Q9BXK1 252 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 PILRAQ9UKJ1 303 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 ATP5EP56381 51 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 H2BFSP57053 126 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 TMEM141Q96I45 108 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 CITO14578 2027 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 SPINK6Q6UWN8 80 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 SSBP3-AS1Q7Z2R9 100 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 NUP98P52948 1817 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 SPTBP11277 2137 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 LIPT2A6NK58 231 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 CCL5P13501 91 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 COL18A1P39060 1754 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 LECT2O14960 151 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 NDUFA7O95182 113 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 INSL3P51460 131 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 CD200R1LQ6Q8B3 271 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 FOXI2Q6ZQN5 318 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 DAZ4Q86SG3 579 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 DAZ1Q9NQZ3 744 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 DAZ3Q9NR90 486 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 IL9P15248 144 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 RPP25Q9BUL9 199 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 Q9H8V8 135 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 IGKV1-9A0A0C4DH69 117 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 I3L3M4 83 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 PRSS46E5RG02 174 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 H0Y8X5 98 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 C16orf97H3BN30 126 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 MT-ATP8P03928 68 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 PCOLCEQ15113 449 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 BADQ92934 168 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 TRBV7-6A0A0J9YX20 115 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 A6NDX4 124 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 BLCAPP62952 87 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 C2orf66Q6UXQ4 117 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 LHFPL1Q86WI0 220 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 Q8N9W7 124 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 NPBQ8NG41 125 aa6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 TNRC6CQ9HCJ0 1690 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-201ENST00000313860 K7ESM1 405 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 LGALS9O00182 355 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 NHSQ6T4R5 1651 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 IGHV7-81A0A0B4J1V7 117 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 IGLV2-23P01705 113 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 PRLHP81277 87 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 ATP5G1P05496 136 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 ZIC4Q8N9L1 334 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 CCDC179H3BU77 68 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 COX8AP10176 69 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 DMKNQ6E0U4 476 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 C5orf66Q9H5L9 145 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 CCL7P80098 99 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 PIK3CD-AS1Q5SR53 167 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 IGF2BP2-AS1Q96M15 143 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 FBLN5Q9UBX5 448 aa6.17□□□□□ -1.42
LIMCH1-201ENST00000313860 COLCA2A8K830 154 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 LINC01387J3KSC0 135 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 CRYGAP11844 174 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 SNED1Q8TER0 1413 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 C16orf54Q6UWD8 224 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 PYGO2Q9BRQ0 406 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 A0A1W2PPC1 479 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 IGF2-ASQ6U949 168 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 LINC00311Q8N616 119 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 ARRDC1-AS1Q9H2J1 176 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 PRCDQ00LT1 54 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 CHCHD2Q9Y6H1 151 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 TRAV1-1A0A0B4J248 108 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 VOPP1Q96AW1 172 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 CAMK2N2Q96S95 79 aa6.16□□□□□ -1.42
LIMCH1-201ENST00000313860 SLIT2O94813 1529 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 IGLV10-54A0A075B6I4 117 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 IGHV1-58A0A0C4DH39 117 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 A0A0J9YY99 117 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 TMEM213A2RRL7 107 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 NTF4P34130 210 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 PVRIGQ6DKI7 326 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 LRRC75A-AS1Q8N1F1 130 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 FER1L6Q2WGJ9 1857 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 TCRBV5S1A1TA0A578 114 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 PMS2P5A8MQ11 134 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 EFNA2O43921 213 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 NEU4Q8WWR8 484 aaPredicted RBP6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 PRSS22Q9GZN4 317 aa6.15□□□□□ -1.42
LIMCH1-201ENST00000313860 TMEM223A0PJW6 202 aa6.15□□□□□ -1.43
LIMCH1-201ENST00000313860 SLC22A18ASQ8N1D0 253 aa6.15□□□□□ -1.43
LIMCH1-201ENST00000313860 B9D2Q9BPU9 175 aa6.15□□□□□ -1.43
LIMCH1-201ENST00000313860 ROBO1Q9Y6N7 1651 aa6.15□□□□□ -1.43
LIMCH1-201ENST00000313860 EBI3Q14213 229 aa6.15□□□□□ -1.43
LIMCH1-201ENST00000313860 MBD3L4A6NDZ8 208 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 MBD3L5A6NJ08 208 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 TMEM256-PLSCR3K7ERE1 68 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 C1QCP02747 245 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 IGLC1P0CG04 106 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 IGLL1P15814 213 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 SPATA31B1PQ5VZV4 182 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 PATE2Q6UY27 113 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms