RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 IFI27P40305 119 aaPredicted RBP8.73□□□□□ -1.01
LSM3-201ENST00000306024 DUX4L9Q6RFH8 374 aaPredicted RBP8.73□□□□□ -1.01
LSM3-201ENST00000306024 GOLT1AQ6ZVE7 132 aa8.73□□□□□ -1.01
LSM3-201ENST00000306024 GAFA1Q96PS6 74 aa8.73□□□□□ -1.01
LSM3-201ENST00000306024 SRSF8Q9BRL6 282 aaKnown RBP8.73□□□□□ -1.01
LSM3-201ENST00000306024 NCR2O95944 276 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 PRB4P10163 310 aaPredicted RBP8.72□□□□□ -1.01
LSM3-201ENST00000306024 TEX29Q8N6K0 151 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 PIMREGQ9BSJ6 248 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 LAMA5O15230 3695 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 B5MCH6 92 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 K7EMI3 77 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 ZNF329Q86UD4 541 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 SPAG8Q99932 426 aaPredicted RBP8.72□□□□□ -1.01
LSM3-201ENST00000306024 NDFIP1Q9BT67 221 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 TMEM160Q9NX00 188 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 P0C879 139 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 FXYD2P54710 66 aa8.72□□□□□ -1.01
LSM3-201ENST00000306024 TNCP24821 2201 aa8.71□□□□□ -1.01
LSM3-201ENST00000306024 IGHV3-21A0A0B4J1V1 117 aa8.71□□□□□ -1.01
LSM3-201ENST00000306024 TTC32Q5I0X7 151 aa8.71□□□□□ -1.01
LSM3-201ENST00000306024 LCNL1Q6ZST4 164 aa8.71□□□□□ -1.01
LSM3-201ENST00000306024 OR5AN1Q8NGI8 311 aa8.71□□□□□ -1.01
LSM3-201ENST00000306024 FAM90A9PA6NNJ1 464 aa8.71□□□□□ -1.02
LSM3-201ENST00000306024 IL4P05112 153 aa8.71□□□□□ -1.02
LSM3-201ENST00000306024 TCTEX1D4Q5JR98 221 aa8.71□□□□□ -1.02
LSM3-201ENST00000306024 CENPEQ02224 2701 aa8.71□□□□□ -1.02
LSM3-201ENST00000306024 GTSCR1Q86UQ5 136 aa8.71□□□□□ -1.02
LSM3-201ENST00000306024 BOD1L2Q8IYS8 172 aa8.71□□□□□ -1.02
LSM3-201ENST00000306024 CIARTQ8N365 385 aaPredicted RBP8.71□□□□□ -1.02
LSM3-201ENST00000306024 TRAV8-1A0A0A6YYK1 113 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 LYZP61626 148 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 PLGLAQ15195 96 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 URB1-AS1Q96HZ7 61 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 JPT1Q9UK76 154 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 LINC00312Q9Y6C7 94 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 D6R8Y8 96 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 PSMB2P49721 201 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 PRB3Q04118 309 aaPredicted RBP8.7□□□□□ -1.02
LSM3-201ENST00000306024 HES1Q14469 280 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 ZFAND6Q6FIF0 208 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 ORMDL3Q8N138 153 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 TLN2Q9Y4G6 2542 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 LHBP01229 141 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 ARMS2P0C7Q2 107 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 BRWD1-AS2P59051 145 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 SRSF9Q13242 221 aaKnown RBP eCLIP8.7□□□□□ -1.02
LSM3-201ENST00000306024 FAM120AOSQ5T036 256 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 SCGB1D4Q6XE38 83 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 OR1L8Q8NGR8 309 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 RPEQ96AT9 228 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 FMC1Q96HJ9 113 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 FOXC2Q99958 501 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 SMPXQ9UHP9 88 aa8.7□□□□□ -1.02
LSM3-201ENST00000306024 SIVA1O15304 175 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 CD69Q07108 199 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 LGALS9BQ3B8N2 356 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 LGALS9CQ6DKI2 356 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 HARBI1Q96MB7 349 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 TTTY13Q9BZ97 58 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 BPESC1Q9GZL8 116 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 CHD6Q8TD26 2715 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 NCBP2LA6PVI3 153 aaKnown RBP8.69□□□□□ -1.02
LSM3-201ENST00000306024 APELAP0DMC3 54 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 LYRM7Q5U5X0 104 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 C8orf86Q6ZUL3 223 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 NRGNQ92686 78 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 C20orf78Q9BR46 151 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 UFC1Q9Y3C8 167 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 TGFAP01135 160 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 TEX36Q5VZQ5 186 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 RNF183Q96D59 192 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 ZNF503Q96F45 646 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 Q9H3A6 140 aa8.69□□□□□ -1.02
LSM3-201ENST00000306024 SPANXB1Q9NS25 103 aaPredicted RBP8.69□□□□□ -1.02
LSM3-201ENST00000306024 ANXA2RQ3ZCQ2 193 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 MORN5Q5VZ52 161 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 DTX2Q86UW9 622 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 KALRNO60229 2985 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 NPIPB6E9PJ23 425 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 GAGE5Q13069 117 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 GAGE6Q13070 117 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 TWIST1Q15672 202 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 SLC25A48Q6ZT89 311 aaKnown RBP8.68□□□□□ -1.02
LSM3-201ENST00000306024 SMIM20Q8N5G0 67 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 MBD6Q96DN6 1003 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 SLC25A2Q9BXI2 301 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 A0A1B0GXF2 115 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 FOXE3Q13461 319 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 TMEM200BQ69YZ2 307 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 GTSF1Q8WW33 167 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 DKK2Q9UBU2 259 aa8.68□□□□□ -1.02
LSM3-201ENST00000306024 FOXI2Q6ZQN5 318 aa8.67□□□□□ -1.02
LSM3-201ENST00000306024 FOXA2Q9Y261 457 aaPredicted RBP8.67□□□□□ -1.02
LSM3-201ENST00000306024 A0A1B0GW15 77 aa8.67□□□□□ -1.02
LSM3-201ENST00000306024 TCRBV4S1A1TA0A5B7 111 aa8.67□□□□□ -1.02
LSM3-201ENST00000306024 ZC2HC1BQ5TFG8 222 aa8.67□□□□□ -1.02
LSM3-201ENST00000306024 MAP1LC3AQ9H492 121 aa8.67□□□□□ -1.02
LSM3-201ENST00000306024 TMEM189A5PLL7 270 aa8.67□□□□□ -1.02
LSM3-201ENST00000306024 SNCGO76070 127 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms