RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 NDUFB8O95169 186 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 RASL10AQ92737 203 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 SIGLEC8Q9NYZ4 499 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 TIMM21Q9BVV7 248 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 ZNRD1Q9P1U0 126 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 KLF12Q9Y4X4 402 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 SPTA1P02549 2419 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 Q8TCH9 128 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 MYMXA0A1B0GTQ4 84 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 CDKN1BP46527 198 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 LINC00158P58513 81 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 TAL2Q16559 108 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 PRSS57Q6UWY2 283 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 PPDPFLQ8WWR9 84 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 HEATR5AQ86XA9 2040 aa10.33□□□□□ -0.76
COL3A1-201ENST00000304636 FAM223BA6NKX1 122 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 CRPP02741 224 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 MALP21145 153 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 Q6ZR03 302 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 NEGR1Q7Z3B1 354 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 FAM223AQ8IWN6 122 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 FXYD5Q96DB9 178 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 OVOL2Q9BRP0 275 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 KIAA2026Q5HYC2 2103 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 ETDBQ3ZM63 59 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 THAP8Q8NA92 274 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 PF4P02776 101 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 LCNL1Q6ZST4 164 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 LYPD6Q86Y78 171 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 SSC4DQ8WTU2 575 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 TMEM141Q96I45 108 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 C2orf66Q6UXQ4 117 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 LY6G5BQ8NDX9 201 aa10.32□□□□□ -0.76
COL3A1-201ENST00000304636 ZNF503-AS2A6NEH8 195 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 CEND1Q8N111 149 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 USMG5Q96IX5 58 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 DEFB104AQ8WTQ1 72 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 TRAV8-3A0A0A6YYJ7 113 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 WT1-ASQ06250 92 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 OR11H6Q8NGC7 330 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 PRR25Q96S07 402 aa10.31□□□□□ -0.76
COL3A1-201ENST00000304636 LTAP01374 205 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 POU2AF1Q16633 256 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 C3orf36Q3SXR2 165 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 DOCK11Q5JSL3 2073 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 TRGV4A0A0C4DH28 118 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 H3BRN7 92 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 GAGE12HA6NDE8 117 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 FCN3O75636 299 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 SLC25A16P16260 332 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 ZNF134P52741 427 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 HIST1H4AP62805 103 aaKnown RBP10.3□□□□□ -0.76
COL3A1-201ENST00000304636 TMEM219Q86XT9 240 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 A0A0G2JNJ9 132 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 ZNF415Q09FC8 603 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 LINC00311Q8N616 119 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 Q9UFV3 132 aa10.3□□□□□ -0.76
COL3A1-201ENST00000304636 DEFB125Q8N687 156 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 ZC2HC1AQ96GY0 325 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 SPXQ9BT56 116 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 TP53TG1Q9Y2A0 90 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 PLXND1Q9Y4D7 1925 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 IGHV3-73A0A0B4J1V6 119 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 S100A7L2Q5SY68 101 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 UNQ6494/PRO21346Q6UXR6 183 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 C1orf122Q6ZSJ8 110 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 A0A087WWL8 130 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 ZNF688P0C7X2 276 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 PMVKQ15126 192 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 TRPT1Q86TN4 253 aaKnown RBP10.29□□□□□ -0.76
COL3A1-201ENST00000304636 H3BMM0 161 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 EFNA4P52798 201 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 RPL36AP83881 106 aaKnown RBP10.29□□□□□ -0.76
COL3A1-201ENST00000304636 Q6ZSR3 168 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 RPL36ALQ969Q0 106 aaKnown RBP10.29□□□□□ -0.76
COL3A1-201ENST00000304636 UBE2WQ96B02 151 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 NPYP01303 97 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 IL17RELQ6ZVW7 336 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 GATD1Q8NB37 220 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 CHCHD5Q9BSY4 110 aa10.29□□□□□ -0.76
COL3A1-201ENST00000304636 COL4A6Q14031 1691 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 K7EM74 188 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 LEPROTO15243 131 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 CCL25O15444 150 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 PHLDA1Q8WV24 401 aaPredicted RBP10.28□□□□□ -0.76
COL3A1-201ENST00000304636 ATP6V0BQ99437 205 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 ZNF747Q9BV97 191 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 IGHV2-70DA0A0C4DH43 119 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 ZNF48Q96MX3 618 aaPredicted RBP10.28□□□□□ -0.76
COL3A1-201ENST00000304636 RHPN1-AS1Q9BWJ2 59 aa10.28□□□□□ -0.76
COL3A1-201ENST00000304636 FAM110DQ8TAY7 271 aaPredicted RBP10.28□□□□□ -0.76
COL3A1-201ENST00000304636 MRPL35Q9NZE8 188 aaKnown RBP10.28□□□□□ -0.76
COL3A1-201ENST00000304636 HLA-DRB4P13762 266 aa10.27□□□□□ -0.76
COL3A1-201ENST00000304636 COL8A2P25067 703 aa10.27□□□□□ -0.76
COL3A1-201ENST00000304636 HLA-DRB4X5D2U9 266 aa10.27□□□□□ -0.76
COL3A1-201ENST00000304636 NUPR1O60356 82 aa10.27□□□□□ -0.77
COL3A1-201ENST00000304636 HELZP42694 1942 aaKnown RBP10.27□□□□□ -0.77
COL3A1-201ENST00000304636 PAX4O43316 350 aa10.27□□□□□ -0.77
COL3A1-201ENST00000304636 NDUFS7O75251 213 aa10.27□□□□□ -0.77
COL3A1-201ENST00000304636 EDA2RQ9HAV5 297 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms