RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C17orf98A8MV24 154 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 GATA4P43694 442 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 SDK1Q7Z5N4 2213 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 FOXF2Q12947 444 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 ZNF295-AS1Q8N0V1 137 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 KIAA1549LQ6ZVL6 1849 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 IGHV3OR16-10A0A075B7F0 116 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 FAM240AA0A1B0GVK7 77 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 RNF144BQ7Z419 303 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 TMEM158Q8WZ71 300 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 RPUSD1Q9UJJ7 312 aaKnown RBP5.22□□□□□ -1.57
VPS35-201ENST00000299138 FBXL7Q9UJT9 491 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 PRSS29PA6NIE9 313 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 SAP30O75446 220 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 PSMB8P28062 276 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 LINC00574Q9H8X3 128 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 TMEM14BQ9NUH8 114 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 TMEM14CQ9P0S9 112 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 F6UB75 175 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 SMKR1H3BMG3 65 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 Q6ZVH6 145 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 DCTN5Q9BTE1 182 aa5.21□□□□□ -1.57
VPS35-201ENST00000299138 CCL8P80075 99 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 ZNF876PQ49A33 203 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 SH2D6Q7Z4S9 175 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 RPRMLQ8N4K4 120 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 LINC00311Q8N616 119 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 DEFB105AQ8NG35 78 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 TRGV9Q99603 122 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 ARRDC1-AS1Q9H2J1 176 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 BRWD1Q9NSI6 2320 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 CCL25O15444 150 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 EIF4EBP1Q13541 118 aaPredicted RBP5.21□□□□□ -1.58
VPS35-201ENST00000299138 PDE6HQ13956 83 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 CACNA1DQ01668 2161 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 H3BS24 57 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 SRD5A1P18405 259 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 ZNF826PQ6ZT77 177 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 RNF183Q96D59 192 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 SCRT2Q9NQ03 307 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 TCRBV4S1A1TA0A5B7 111 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 H0YJW9 148 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 HIGD1BQ9P298 99 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 LINC00312Q9Y6C7 94 aa5.21□□□□□ -1.58
VPS35-201ENST00000299138 E9PLN8 166 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 TAX1BP3O14907 124 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 PFN2P35080 140 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 OR9G1Q8NH87 305 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 IGHV1OR15-1A0A075B7D0 117 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 TRGV3P03979 118 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 PYYP10082 97 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 MBD6Q96DN6 1003 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 C1orf159Q96HA4 380 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 ATOX1O00244 68 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 CD55P08174 381 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 FREM3P0C091 2139 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 LGALS9BQ3B8N2 356 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 LGALS9CQ6DKI2 356 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 PVRIGQ6DKI7 326 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 SPINK14Q6IE38 97 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 TTTY12Q9BZ98 90 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 PRDM6Q9NQX0 595 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 FAM229AH3BQW9 127 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 K7EMI3 77 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 CLEC19AQ6UXS0 136 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 THAP8Q8NA92 274 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 PRR33A8MZF0 331 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 RPL39P5Q59GN2 51 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 ASCL2Q99929 193 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 PEMTQ9UBM1 199 aa5.2□□□□□ -1.58
VPS35-201ENST00000299138 FAM57AQ8TBR7 257 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 C21orf62Q9NYP8 219 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 CEP290O15078 2479 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 PRSS46E5RG02 174 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 TRIP6Q15654 476 aaKnown RBP5.19□□□□□ -1.58
VPS35-201ENST00000299138 Q8TCH9 128 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 KLF14Q8TD94 323 aaPredicted RBP5.19□□□□□ -1.58
VPS35-201ENST00000299138 THBDP07204 575 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 COX8AP10176 69 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 SLC25A16P16260 332 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 ERCC8Q13216 396 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 BVES-AS1Q5T3Y7 98 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 STHQ8IWL8 128 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 CEND1Q8N111 149 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 PROK2Q9HC23 129 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 PSG8Q9UQ74 426 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 CENPFP49454 3210 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 A0A087WX48 190 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 A0A1B0GUS0 222 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 MP68P56378 58 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 A0A1W2PRX2 142 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 G3V4G9 280 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 IGHV3-53P01767 116 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 Q6ZS92 163 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 SPACA3Q8IXA5 215 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 C8orf46Q8TAG6 207 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 SIGLEC8Q9NYZ4 499 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 MYOFQ9NZM1 2061 aa5.19□□□□□ -1.58
VPS35-201ENST00000299138 COL5A1P20908 1838 aaPredicted RBP5.19□□□□□ -1.58
VPS35-201ENST00000299138 SEC16AO15027 2179 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms