RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 TRGV4A0A0C4DH28 118 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 TIMM23O14925 209 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 WFDC9Q8NEX5 89 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 CLUHP3Q96NS8 147 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 TRGV11A0A075B6L2 103 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 TRAV25A0A0B4J276 109 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 DSCR8Q96T75 97 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 IGFL4Q6B9Z1 124 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 C8orf49Q96NF6 230 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 ATOX1O00244 68 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 SIGLEC8Q9NYZ4 499 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 FAM90A9PA6NNJ1 464 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 TP53TG1Q9Y2A0 90 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 IGKV1-5P01602 117 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 KLF5Q13887 457 aaPredicted RBP9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 SSC4DQ8WTU2 575 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 LIME1Q9H400 295 aa9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 TRAV3A0A0B4J244 114 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 HAX1O00165 279 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 RPP25Q9BUL9 199 aaKnown RBP9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 TRAV26-2A0A0B4J265 109 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 NUP210Q8TEM1 1887 aaPredicted RBP9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 M0R1W7 72 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 NTF4P34130 210 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 IGLL5B9A064 214 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 IGLC1P0CG04 106 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 ZNF576Q9H609 170 aa9.63□□□□□ -0.87
SHROOM3-201ENST00000296043 MRPL51Q4U2R6 128 aaKnown RBP9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 SIGLEC15Q6ZMC9 328 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 KLRD1Q13241 179 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 LINC00527Q9UJ94 153 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 SRRM4A7MD48 611 aaKnown RBP9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 DUTP33316 252 aaKnown RBP9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 DAD1P61803 113 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 FBLN5Q9UBX5 448 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 ABCA2Q9BZC7 2435 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 TMEM14EPQ6UXP3 125 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 LY6G5BQ8NDX9 201 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 DKK2Q9UBU2 259 aa9.62□□□□□ -0.87
SHROOM3-201ENST00000296043 C5orf24Q7Z6I8 188 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 MRPL35Q9NZE8 188 aaKnown RBP9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 PRR7Q8TB68 274 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 C10orf55Q5SWW7 151 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 GFRA4Q9GZZ7 299 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 TET2Q6N021 2002 aaPredicted RBP9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 LYPD3O95274 346 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 NDUFV3P56181 108 aaKnown RBP9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 LHFPL1Q86WI0 220 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 BAALC-AS2P0C853 105 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 PEMTQ9UBM1 199 aa9.61□□□□□ -0.87
SHROOM3-201ENST00000296043 ZNF837Q96EG3 531 aaPredicted RBP9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 TM4SF5O14894 197 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 SMIM27A0A1W2PRY6 76 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 CSRP3P50461 194 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 MORN2Q502X0 79 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 MPLKIPQ8TAP9 179 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 TMEM133Q9H2Q1 129 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 ADAMTS9Q9P2N4 1935 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 IGHV1-45A0A0A0MS14 117 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 CR1LQ2VPA4 569 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 TRGV9Q99603 122 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 SPATA25Q9BR10 227 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 MRPS18CQ9Y3D5 142 aaKnown RBP9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 NBR2O15453 112 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 NDUFS7O75251 213 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 BAALCQ8WXS3 180 aa9.6□□□□□ -0.87
SHROOM3-201ENST00000296043 CENPVQ7Z7K6 275 aaPredicted RBP9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 MYOD1P15172 320 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 WIPF2Q8TF74 440 aaPredicted RBP9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 IGHV1OR15-9A0A0B4J2B8 117 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 TIAF1O95411 115 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 LINC00271P0C7V0 271 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 C6orf226Q5I0X4 101 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 A0A1W2PRX2 142 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 SIVA1O15304 175 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 TAX1BP3O14907 124 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 Q8N8P6 123 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 MT-ATP8P03928 68 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 SCRT2Q9NQ03 307 aa9.59□□□□□ -0.87
SHROOM3-201ENST00000296043 TAL2Q16559 108 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 C15orf62A8K5M9 175 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 IGHV3-53P01767 116 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 CCL3L1P16619 93 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 NDUFA12Q9UI09 145 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 NPYP01303 97 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 V9GYV3 84 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 FAM104BQ5XKR9 115 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 NLRC5Q86WI3 1866 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 YPEL1O60688 119 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 RNASE2P10153 161 aaKnown RBP9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 YPEL2Q96QA6 119 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 PTPRBP23467 1997 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 PFN2P35080 140 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 CCL21O00585 134 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 TGFBR3LH3BV60 316 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 FOXI2Q6ZQN5 318 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 TEN1Q86WV5 123 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 LGALS9BQ3B8N2 356 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 LGALS9CQ6DKI2 356 aa9.58□□□□□ -0.88
SHROOM3-201ENST00000296043 PRR33A8MZF0 331 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms