RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 CLINT1Q14677 625 aa10.28□□□□□ -0.76
HMGN3-201ENST00000275036 RRN3P1Q2M238 152 aa10.28□□□□□ -0.76
HMGN3-201ENST00000275036 SLC25A31Q9H0C2 315 aa10.28□□□□□ -0.76
HMGN3-201ENST00000275036 ZNF586Q9NXT0 402 aa10.28□□□□□ -0.76
HMGN3-201ENST00000275036 YTHDF2Q9Y5A9 579 aaKnown RBP10.28□□□□□ -0.76
HMGN3-201ENST00000275036 ZNF705GA8MUZ8 300 aaPredicted RBP10.27□□□□□ -0.77
HMGN3-201ENST00000275036 SSNA1O43805 119 aa10.27□□□□□ -0.77
HMGN3-201ENST00000275036 MPDU1O75352 247 aa10.27□□□□□ -0.77
HMGN3-201ENST00000275036 KIR3DS1Q14943 382 aa10.27□□□□□ -0.77
HMGN3-201ENST00000275036 TMEM208Q9BTX3 173 aa10.27□□□□□ -0.77
HMGN3-201ENST00000275036 PARD6GQ9BYG4 376 aaPredicted RBP10.27□□□□□ -0.77
HMGN3-201ENST00000275036 DNAH17Q9UFH2 4485 aa10.27□□□□□ -0.77
HMGN3-201ENST00000275036 HERC2O95714 4834 aa10.26□□□□□ -0.77
HMGN3-201ENST00000275036 MPC2O95563 127 aa10.26□□□□□ -0.77
HMGN3-201ENST00000275036 AZU1P20160 251 aa10.26□□□□□ -0.77
HMGN3-201ENST00000275036 NIPSNAP3BQ9BS92 247 aa10.26□□□□□ -0.77
HMGN3-201ENST00000275036 PLAC8L1A1L4L8 177 aa10.25□□□□□ -0.77
HMGN3-201ENST00000275036 NDUFB4O95168 129 aa10.25□□□□□ -0.77
HMGN3-201ENST00000275036 PYYP10082 97 aa10.25□□□□□ -0.77
HMGN3-201ENST00000275036 SLC25A2Q9BXI2 301 aa10.25□□□□□ -0.77
HMGN3-201ENST00000275036 WDR61Q9GZS3 305 aaKnown RBP10.25□□□□□ -0.77
HMGN3-201ENST00000275036 TMEM14CQ9P0S9 112 aa10.25□□□□□ -0.77
HMGN3-201ENST00000275036 TRBV19A0A075B6N1 114 aa10.24□□□□□ -0.77
HMGN3-201ENST00000275036 CDKN1BP46527 198 aa10.24□□□□□ -0.77
HMGN3-201ENST00000275036 GUK1Q16774 197 aa10.24□□□□□ -0.77
HMGN3-201ENST00000275036 FAM167A-AS1Q96KT0 104 aa10.24□□□□□ -0.77
HMGN3-201ENST00000275036 PPP1R14DQ9NXH3 145 aa10.24□□□□□ -0.77
HMGN3-201ENST00000275036 ALG5Q9Y673 324 aa10.24□□□□□ -0.77
HMGN3-201ENST00000275036 TEX48A0A1B0GUV7 120 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 M0R3E3 92 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 ZNF253O75346 499 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 CT45A10P0DMU9 189 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 HIST1H1EP10412 219 aaKnown RBP10.23□□□□□ -0.77
HMGN3-201ENST00000275036 TSPOP30536 169 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 OXA1LQ15070 435 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 MIR17HGQ75NE6 70 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 LINC01587Q99440 93 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 ATP5SQ99766 215 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 MBD2Q9UBB5 411 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 HSPB11Q9Y547 144 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 KIAA1109Q2LD37 5005 aa10.23□□□□□ -0.77
HMGN3-201ENST00000275036 NACAE9PAV3 2078 aa10.22□□□□□ -0.77
HMGN3-201ENST00000275036 NPIPB6E9PJ23 425 aa10.22□□□□□ -0.77
HMGN3-201ENST00000275036 RPL12P30050 165 aaKnown RBP10.22□□□□□ -0.77
HMGN3-201ENST00000275036 TMEM256Q8N2U0 113 aa10.22□□□□□ -0.77
HMGN3-201ENST00000275036 OR10J6PQ8NGY7 276 aa10.22□□□□□ -0.77
HMGN3-201ENST00000275036 BLNKQ8WV28 456 aa10.22□□□□□ -0.77
HMGN3-201ENST00000275036 NDUFAF3Q9BU61 184 aa10.22□□□□□ -0.77
HMGN3-201ENST00000275036 SMIM3Q9BZL3 60 aa10.22□□□□□ -0.77
HMGN3-201ENST00000275036 HTN3P15516 51 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 TAS2R60P59551 318 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 DAD1P61803 113 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 PDE6HQ13956 83 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 FCN2Q15485 313 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 GFI1BQ5VTD9 330 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 EXOC3-AS1Q8N2X6 119 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 WFDC1Q9HC57 220 aa10.21□□□□□ -0.77
HMGN3-201ENST00000275036 LYRM9A8MSI8 78 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 J3KRW8 73 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 PTTG1O95997 202 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 PET100P0DJ07 73 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 HTN1P15515 57 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 ERCC8Q13216 396 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 FXYD5Q96DB9 178 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 MRPL53Q96EL3 112 aaKnown RBP10.2□□□□□ -0.78
HMGN3-201ENST00000275036 TIMM9Q9Y5J7 89 aa10.2□□□□□ -0.78
HMGN3-201ENST00000275036 C17orf112F2Z3M2 114 aa10.19□□□□□ -0.78
HMGN3-201ENST00000275036 OR10J4P0C629 311 aa10.19□□□□□ -0.78
HMGN3-201ENST00000275036 RNASE8Q8TDE3 154 aaKnown RBP10.19□□□□□ -0.78
HMGN3-201ENST00000275036 ZNF503Q96F45 646 aa10.19□□□□□ -0.78
HMGN3-201ENST00000275036 ODF3Q96PU9 254 aa10.19□□□□□ -0.78
HMGN3-201ENST00000275036 MRPL32Q9BYC8 188 aaKnown RBP10.19□□□□□ -0.78
HMGN3-201ENST00000275036 OR51M1Q9H341 326 aa10.19□□□□□ -0.78
HMGN3-201ENST00000275036 KCNIP2Q9NS61 270 aa10.19□□□□□ -0.78
HMGN3-201ENST00000275036 FUT9Q9Y231 359 aa10.19□□□□□ -0.78
HMGN3-201ENST00000275036 DYNC1H1Q14204 4646 aaKnown RBP10.18□□□□□ -0.78
HMGN3-201ENST00000275036 H7BYZ3 331 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 EIF3GO75821 320 aaKnown RBP eCLIP10.18□□□□□ -0.78
HMGN3-201ENST00000275036 NBEAP1P0C6P0 100 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 DEFB130BP0DP73 79 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 DEFB130AP0DP74 79 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 ICAM4Q14773 271 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 FFAR4Q5NUL3 377 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 TMEM88Q6PEY1 159 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 PHYHIPLQ96FC7 376 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 C16orf74Q96GX8 76 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 FAM210BQ96KR6 192 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 FAM19A4Q96LR4 140 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 C20orf144Q9BQM9 153 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 PAXXQ9BUH6 204 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 AGPAT4-IT1Q9H0P7 198 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 PRELID1Q9Y255 219 aa10.18□□□□□ -0.78
HMGN3-201ENST00000275036 PKD1P98161 4303 aa10.17□□□□□ -0.78
HMGN3-201ENST00000275036 IGKV2-40A0A087WW87 121 aaPredicted RBP10.17□□□□□ -0.78
HMGN3-201ENST00000275036 TRAV12-3A0A0B4J271 114 aa10.17□□□□□ -0.78
HMGN3-201ENST00000275036 IGKV2D-40P01614 121 aaPredicted RBP10.17□□□□□ -0.78
HMGN3-201ENST00000275036 LEPP41159 167 aa10.17□□□□□ -0.78
HMGN3-201ENST00000275036 FAM122CQ6P4D5 195 aa10.17□□□□□ -0.78
HMGN3-201ENST00000275036 TMEM263Q8WUH6 116 aaKnown RBP10.17□□□□□ -0.78
HMGN3-201ENST00000275036 RNF141Q8WVD5 230 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms