RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 R3HDMLQ9H3Y0 253 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 PLXNB1O43157 2135 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 MED12LQ86YW9 2145 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 TMEM219Q86XT9 240 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 SLC25A16P16260 332 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 SRSF3P84103 164 aaKnown RBP11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 FGF16O43320 207 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 CRYGCP07315 174 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 C5orf64Q2M2E5 130 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 MUSTN1Q8IVN3 82 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 ROS1P08922 2347 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 NDUFA12Q9UI09 145 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 Q8N8P6 123 aa11.38□□□□□ -0.59
CCDC88A-201ENST00000263630 SHANK3Q9BYB0 1731 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 CELA3BP08861 270 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 SMKR1H3BMG3 65 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 NDUFB8O95169 186 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 PRSS46E5RG02 174 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 IGHV1-8P0DP01 117 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 IGFBPL1Q8WX77 278 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 UBR3Q6ZT12 1888 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 HLA-DRB4P13762 266 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 C15orf53Q8NAA6 179 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 Q8TAT8 98 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 HLA-DRB4X5D2U9 266 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 SMIM10L1P0DMW3 83 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 SMIM10Q96HG1 83 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 IGKV1D-13A0A0B4J2D9 117 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 ITGBL1O95965 494 aaPredicted RBP11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 ANGP03950 147 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 IGKV1-13P0DP09 117 aa11.37□□□□□ -0.59
CCDC88A-201ENST00000263630 ETDCA0A1B0GVM5 59 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 PYY3Q5JQD4 70 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 TAX1BP3O14907 124 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 BRCA1P38398 1863 aaKnown RBP11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 E9PLN8 166 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 ARMS2P0C7Q2 107 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 RHPN1-AS1Q9BWJ2 59 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 EFNA4P52798 201 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 RSPO4Q2I0M5 234 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 MESP1Q9BRJ9 268 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 MCRIP2Q9BUT9 160 aaKnown RBP11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 COLCA2A8K830 154 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 C2orf66Q6UXQ4 117 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 GLRX5Q86SX6 157 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 TMEM256Q8N2U0 113 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 PSMB8P28062 276 aa11.36□□□□□ -0.59
CCDC88A-201ENST00000263630 ZNF883P0CG24 379 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 FOXL2P58012 376 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 HERV-K104P63124 156 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 WBP1Q96G27 269 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 NXPH4O95158 308 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 GATA3P23771 443 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 H3BUX3 64 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 ZNF329Q86UD4 541 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 LINC01356Q8N9X3 169 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 ADAMTSL3P82987 1691 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 Q0VG73 95 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 BAALC-AS2P0C853 105 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 TMEM200BQ69YZ2 307 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 RFPL3SP0C7P2 107 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 ATP1A1-AS1Q5TC04 95 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 VSIG2Q96IQ7 327 aa11.35□□□□□ -0.59
CCDC88A-201ENST00000263630 C9JQL5 133 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 ETDBQ3ZM63 59 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 BRK1Q8WUW1 75 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 ZNF503Q96F45 646 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 OBSL1O75147 1896 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 PFN1P07737 140 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 COX8AP10176 69 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 IGLV3-21P80748 117 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 SIVA1O15304 175 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 CELA3AP09093 270 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 BUB1B-PAK6H3BSN5 160 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 MUC4Q99102 2169 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 PRR15LQ9BU68 103 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 GLI3P10071 1580 aa11.34□□□□□ -0.59
CCDC88A-201ENST00000263630 DKK1O94907 266 aa11.33□□□□□ -0.59
CCDC88A-201ENST00000263630 K7EMI3 77 aa11.33□□□□□ -0.6
CCDC88A-201ENST00000263630 Q86TA4 180 aa11.33□□□□□ -0.6
CCDC88A-201ENST00000263630 DSCAML1Q8TD84 2053 aa11.33□□□□□ -0.6
CCDC88A-201ENST00000263630 NREPQ16612 68 aa11.33□□□□□ -0.6
CCDC88A-201ENST00000263630 F8VRH5 84 aa11.33□□□□□ -0.6
CCDC88A-201ENST00000263630 LINC00527Q9UJ94 153 aa11.33□□□□□ -0.6
CCDC88A-201ENST00000263630 ZNF664Q8N3J9 261 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 BUB3O43684 328 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 LCTP09848 1927 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 TNRC6BQ9UPQ9 1833 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 C20orf144Q9BQM9 153 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 IGKV1-5P01602 117 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 CSRP2Q16527 193 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 LGALS9BQ3B8N2 356 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 LGALS9CQ6DKI2 356 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 C9orf106Q8NAJ2 232 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 WISP3O95389 354 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 HIGD2BQ4VC39 106 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 H0YJW9 148 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 CASC2Q6XLA1 102 aa11.32□□□□□ -0.6
CCDC88A-201ENST00000263630 B5MCH6 92 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms