RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DSCAML1Q8TD84 2053 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 LEPROTO15243 131 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 SNRPCP09234 159 aaKnown RBP4.09□□□□□ -1.76
SCN1A-218ENST00000640036 SAA1P0DJI8 122 aaPredicted RBP4.09□□□□□ -1.76
SCN1A-218ENST00000640036 FOXG1P55316 489 aaPredicted RBP4.09□□□□□ -1.76
SCN1A-218ENST00000640036 MAJINQ3KP22 176 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 FSHBP01225 129 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 CSN3P07498 182 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 NTF4P34130 210 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 VWC2Q2TAL6 325 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 HS3ST6Q96QI5 342 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 SRSF8Q9BRL6 282 aaKnown RBP4.09□□□□□ -1.76
SCN1A-218ENST00000640036 NCOR1P1Q9H4R4 102 aa4.09□□□□□ -1.76
SCN1A-218ENST00000640036 SHISA9B4DS77 424 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 F2Z2F3 143 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 SCGB3A1Q96QR1 104 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 IL36RNQ9UBH0 155 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 M0R2P5 195 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 RASL11AQ6T310 242 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 BRK1Q8WUW1 75 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 IFI27L2Q9H2X8 130 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 TMEM14BQ9NUH8 114 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 KIAA1549Q9HCM3 1950 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 PGLYRP1O75594 196 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-218ENST00000640036 LYPD3O95274 346 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 IGHV4-31P0DP07 118 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 SELLP14151 372 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 ATP6V0CP27449 155 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 GOLT1AQ6ZVE7 132 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 Q6ZWC4 215 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 SH2D6Q7Z4S9 175 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 MSRB3Q8IXL7 192 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 Q96M66 194 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 PLXNB3Q9ULL4 1909 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 TRAV5A0A0B4J249 113 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 CD55P08174 381 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 NBEAP1P0C6P0 100 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 CHTOPQ9Y3Y2 248 aaKnown RBP4.08□□□□□ -1.76
SCN1A-218ENST00000640036 C9orf170A2RU37 121 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 F8W735 103 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-218ENST00000640036 ITGB1BP1O14713 200 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 IGHV3-53P01767 116 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 FGF9P31371 208 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-218ENST00000640036 FXYD7P58549 80 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 B3GALT5-AS1P59052 145 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 TNFRSF9Q07011 255 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 C9orf139Q6ZV77 190 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 CYB561D1Q8N8Q1 229 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 SPSB4Q96A44 273 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 PRR32B1ATL7 298 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 MPC2O95563 127 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 TMEM88Q6PEY1 159 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 CSTL1Q9H114 145 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 SS18Q15532 418 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 MUC21Q5SSG8 566 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 FAAP20Q6NZ36 180 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 ORMDL3Q8N138 153 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 UBL5Q9BZL1 73 aa4.08□□□□□ -1.76
SCN1A-218ENST00000640036 UBE2CO00762 179 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 IER3P46695 156 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 SMIM20Q8N5G0 67 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 PLEKHB2Q96CS7 222 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 GAFA1Q96PS6 74 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 CLDN16Q9Y5I7 305 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 WDR87Q6ZQQ6 2873 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 H3BUA1 57 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 PAX4O43316 350 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 BCL2P10415 239 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 C8orf82Q6P1X6 216 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-218ENST00000640036 C11orf45Q8TAV5 145 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 CHKB-CPT1BH3BT56 60 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 RPS11P62280 158 aaKnown RBP eCLIP4.07□□□□□ -1.76
SCN1A-218ENST00000640036 SSBP2P81877 361 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-218ENST00000640036 SRSF2Q01130 221 aaKnown RBP4.07□□□□□ -1.76
SCN1A-218ENST00000640036 RUNX1Q01196 453 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 MRPL52Q86TS9 123 aaKnown RBP4.07□□□□□ -1.76
SCN1A-218ENST00000640036 SPXQ9BT56 116 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 ALPK3Q96L96 1907 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 A0A1B0GUT8 65 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 MARVELD1Q9BSK0 173 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 DERL1Q9BUN8 251 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 PCNX3Q9H6A9 2034 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 TRBV20OR9-2A0A075B6H5 130 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 TCRBV5S2A0A599 114 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 ATP6V0E1O15342 81 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 ZNF479Q96JC4 524 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 PGLYRP4Q96LB8 373 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 KLHDC2Q9Y2U9 406 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 SRSF1Q07955 248 aaKnown RBP eCLIP4.07□□□□□ -1.76
SCN1A-218ENST00000640036 PPP1R1AQ13522 171 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 FOXB2Q5VYV0 432 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 LINC00477Q96M19 166 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 Q9HAA7 133 aa4.07□□□□□ -1.76
SCN1A-218ENST00000640036 A0A1B0GW64 132 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 FABP5P3A8MUU1 101 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 LDLRAD4O15165 306 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 IGHV4-38-2P0DP08 117 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 UBE2BP63146 152 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 FAM89BQ8N5H3 189 aa4.06□□□□□ -1.76
SCN1A-218ENST00000640036 Q8TCH9 128 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms