RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 NOTCH3Q9UM47 2321 aa15.49■□□□□ 0.07
CLN3-245ENST00000636172 PKD1L1Q8TDX9 2849 aa15.49■□□□□ 0.07
CLN3-245ENST00000636172 SLC17A3O00476 420 aa15.48■□□□□ 0.07
CLN3-245ENST00000636172 IGLV1-51P01701 117 aa15.48■□□□□ 0.07
CLN3-245ENST00000636172 GUK1Q16774 197 aa15.48■□□□□ 0.07
CLN3-245ENST00000636172 NRN1Q9NPD7 142 aa15.48■□□□□ 0.07
CLN3-245ENST00000636172 NDUFB4O95168 129 aa15.48■□□□□ 0.07
CLN3-245ENST00000636172 MS4A6AQ9H2W1 248 aa15.48■□□□□ 0.07
CLN3-245ENST00000636172 GNG13Q9P2W3 67 aa15.48■□□□□ 0.07
CLN3-245ENST00000636172 IZUMO1RA6ND01 250 aa15.47■□□□□ 0.07
CLN3-245ENST00000636172 MEOX2P50222 304 aa15.47■□□□□ 0.07
CLN3-245ENST00000636172 C9orf66Q5T8R8 295 aa15.47■□□□□ 0.07
CLN3-245ENST00000636172 RBPMS2Q6ZRY4 209 aaKnown RBP15.47■□□□□ 0.07
CLN3-245ENST00000636172 GBGT1Q8N5D6 347 aa15.47■□□□□ 0.07
CLN3-245ENST00000636172 MCRIP2Q9BUT9 160 aaKnown RBP15.47■□□□□ 0.07
CLN3-245ENST00000636172 SOCS3O14543 225 aa15.46■□□□□ 0.07
CLN3-245ENST00000636172 TSPAN4O14817 238 aa15.46■□□□□ 0.07
CLN3-245ENST00000636172 INSL3P51460 131 aa15.46■□□□□ 0.07
CLN3-245ENST00000636172 UBE2G2P60604 165 aa15.46■□□□□ 0.07
CLN3-245ENST00000636172 PMS2P11Q13670 270 aa15.46■□□□□ 0.07
CLN3-245ENST00000636172 PDE6HQ13956 83 aa15.46■□□□□ 0.07
CLN3-245ENST00000636172 DCANP1Q8TF63 244 aa15.46■□□□□ 0.07
CLN3-245ENST00000636172 YTHDF2Q9Y5A9 579 aaKnown RBP15.46■□□□□ 0.07
CLN3-245ENST00000636172 TRAV25A0A0B4J276 109 aa15.45■□□□□ 0.06
CLN3-245ENST00000636172 ZNF253O75346 499 aa15.45■□□□□ 0.06
CLN3-245ENST00000636172 IGLL1P15814 213 aa15.45■□□□□ 0.06
CLN3-245ENST00000636172 PPT1P50897 306 aa15.45■□□□□ 0.06
CLN3-245ENST00000636172 FAM74A7A6NL05 159 aa15.44■□□□□ 0.06
CLN3-245ENST00000636172 PAGE4O60829 102 aa15.44■□□□□ 0.06
CLN3-245ENST00000636172 TFPI2P48307 235 aa15.44■□□□□ 0.06
CLN3-245ENST00000636172 RANP62826 216 aaKnown RBP15.44■□□□□ 0.06
CLN3-245ENST00000636172 OR2K2Q8NGT1 345 aa15.44■□□□□ 0.06
CLN3-245ENST00000636172 MANBALQ9NQG1 85 aa15.44■□□□□ 0.06
CLN3-245ENST00000636172 ZNF331Q9NQX6 463 aaPredicted RBP15.44■□□□□ 0.06
CLN3-245ENST00000636172 CMYA5Q8N3K9 4069 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 TRAV8-2A0A0B4J237 113 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 A0A1W2PRE2 83 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 PRR31Q5SQ13 230 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 IGFL4Q6B9Z1 124 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 WFDC3Q8IUB2 231 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 ARL2-SNX15V9GYD0 113 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 K7EQG2 157 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 DNASE2O00115 360 aaPredicted RBP15.43■□□□□ 0.06
CLN3-245ENST00000636172 IFNA1P01562 189 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 BCL2P10415 239 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 PAFAH1B2P68402 229 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 HAGHQ16775 308 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 EXOC3-AS1Q8N2X6 119 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 C16orf92Q96LL3 132 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 SPAG8Q99932 426 aaPredicted RBP15.43■□□□□ 0.06
CLN3-245ENST00000636172 SLC50A1Q9BRV3 221 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 Q9H3A6 140 aa15.43■□□□□ 0.06
CLN3-245ENST00000636172 TRAV2A0A0B4J234 112 aa15.42■□□□□ 0.06
CLN3-245ENST00000636172 GGTLC3B5MD39 225 aa15.42■□□□□ 0.06
CLN3-245ENST00000636172 PSG9Q00887 426 aa15.42■□□□□ 0.06
CLN3-245ENST00000636172 LCN12Q6JVE5 192 aa15.42■□□□□ 0.06
CLN3-245ENST00000636172 FAM24BQ8N5W8 94 aa15.42■□□□□ 0.06
CLN3-245ENST00000636172 FAM210AQ96ND0 272 aa15.42■□□□□ 0.06
CLN3-245ENST00000636172 OTORQ9NRC9 128 aa15.42■□□□□ 0.06
CLN3-245ENST00000636172 LOC102723971A0A1B0GUV8 181 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 WIPF1O43516 503 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 HLA-DMBP28068 263 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 ATP5G3P48201 142 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 GUCA2BQ16661 112 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 SAMD13Q5VXD3 122 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 CST9LP1Q5W188 147 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 LYPD1Q8N2G4 141 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 RNF182Q8N6D2 247 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 RARRES2Q99969 163 aa15.41■□□□□ 0.06
CLN3-245ENST00000636172 ZNF256Q9Y2P7 627 aaPredicted RBP15.41■□□□□ 0.06
CLN3-245ENST00000636172 RBFOX3A6NFN3 312 aa15.4■□□□□ 0.06
CLN3-245ENST00000636172 ISLRO14498 428 aa15.4■□□□□ 0.06
CLN3-245ENST00000636172 ICAM4Q14773 271 aa15.4■□□□□ 0.06
CLN3-245ENST00000636172 TOR2AQ5JU69 321 aa15.4■□□□□ 0.06
CLN3-245ENST00000636172 PGPA6NDG6 321 aa15.39■□□□□ 0.05
CLN3-245ENST00000636172 SUMO1P63165 101 aaKnown RBP15.39■□□□□ 0.05
CLN3-245ENST00000636172 C20orf173Q96LM9 149 aa15.39■□□□□ 0.05
CLN3-245ENST00000636172 AAMDCQ9H7C9 122 aa15.39■□□□□ 0.05
CLN3-245ENST00000636172 VAX2Q9UIW0 290 aa15.39■□□□□ 0.05
CLN3-245ENST00000636172 SORL1Q92673 2214 aa15.39■□□□□ 0.05
CLN3-245ENST00000636172 OR4C46A6NHA9 309 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 ZNF506Q5JVG8 444 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 CCDC28AQ8IWP9 274 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 MED9Q9NWA0 146 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 LINC00862A6NCI5 91 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 C11orf94C9JXX5 98 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 M0R3E3 92 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 TAGLN2P37802 199 aaKnown RBP15.38■□□□□ 0.05
CLN3-245ENST00000636172 ID1P41134 155 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 MEF2BQ02080 365 aaPredicted RBP15.38■□□□□ 0.05
CLN3-245ENST00000636172 GPR61Q9BZJ8 451 aa15.38■□□□□ 0.05
CLN3-245ENST00000636172 NKX6-2Q9C056 277 aaPredicted RBP15.38■□□□□ 0.05
CLN3-245ENST00000636172 EIF5A2Q9GZV4 153 aaKnown RBP15.38■□□□□ 0.05
CLN3-245ENST00000636172 ZNF688P0C7X2 276 aa15.37■□□□□ 0.05
CLN3-245ENST00000636172 CD81P60033 236 aa15.37■□□□□ 0.05
CLN3-245ENST00000636172 PSG3Q16557 428 aa15.37■□□□□ 0.05
CLN3-245ENST00000636172 OXLD1Q5BKU9 147 aa15.37■□□□□ 0.05
CLN3-245ENST00000636172 RXFP4Q8TDU9 374 aa15.37■□□□□ 0.05
CLN3-245ENST00000636172 LINC00052Q96N35 136 aa15.37■□□□□ 0.05
CLN3-245ENST00000636172 SLC25A5P05141 298 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms