RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 PSG3Q16557 428 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 SAPCD1Q5SSQ6 148 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 EXOC3-AS1Q8N2X6 119 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 FRZBQ92765 325 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 MRPL53Q96EL3 112 aaKnown RBP12.67□□□□□ -0.38
LDB3-208ENST00000623007 GNB1LQ9BYB4 327 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 PRSS22Q9GZN4 317 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 NPFFR1Q9GZQ6 430 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 RNASE7Q9H1E1 156 aaKnown RBP12.67□□□□□ -0.38
LDB3-208ENST00000623007 NAT8BQ9UHF3 227 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 RPH3ALQ9UNE2 315 aa12.67□□□□□ -0.38
LDB3-208ENST00000623007 SETXQ7Z333 2677 aaKnown RBP12.67□□□□□ -0.38
LDB3-208ENST00000623007 ASH1LQ9NR48 2969 aaKnown RBP12.66□□□□□ -0.38
LDB3-208ENST00000623007 TRAV34A0A0B4J273 112 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 IZUMO1RA6ND01 250 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 A8MWL6 223 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 NDUFA6P56556 154 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 SLC35B1P78383 322 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 CFHR3Q02985 330 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 GOLT1AQ6ZVE7 132 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 TSKUQ8WUA8 353 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 U3KQE9 123 aa12.66□□□□□ -0.38
LDB3-208ENST00000623007 ZNF785A8K8V0 405 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 SLC17A3O00476 420 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 P01737 135 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 IGHG4P01861 327 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 PF4V1P10720 104 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 AKR1D1P51857 326 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 RPL15P61313 204 aaKnown RBP12.65□□□□□ -0.38
LDB3-208ENST00000623007 BLCAPP62952 87 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 COA6Q5JTJ3 125 aaKnown RBP12.65□□□□□ -0.38
LDB3-208ENST00000623007 ATP5L2Q7Z4Y8 100 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 TMEM86BQ8N661 226 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 NUDT10Q8NFP7 164 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 NUDT11Q96G61 164 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 FLNCQ14315 2725 aa12.65□□□□□ -0.38
LDB3-208ENST00000623007 PRRC2AP48634 2157 aaKnown RBP12.65□□□□□ -0.39
LDB3-208ENST00000623007 RBAKDNA6NC62 111 aa12.64□□□□□ -0.39
LDB3-208ENST00000623007 IGHV4-59P01825 116 aa12.64□□□□□ -0.39
LDB3-208ENST00000623007 CT45A10P0DMU9 189 aa12.64□□□□□ -0.39
LDB3-208ENST00000623007 BMI1P35226 326 aa12.64□□□□□ -0.39
LDB3-208ENST00000623007 SAMD13Q5VXD3 122 aa12.64□□□□□ -0.39
LDB3-208ENST00000623007 RPP21Q9H633 154 aaKnown RBP12.64□□□□□ -0.39
LDB3-208ENST00000623007 HLA-DQA1P01909 254 aa12.64□□□□□ -0.39
LDB3-208ENST00000623007 WIPF2Q8TF74 440 aaPredicted RBP12.64□□□□□ -0.39
LDB3-208ENST00000623007 ZNF331Q9NQX6 463 aaPredicted RBP12.64□□□□□ -0.39
LDB3-208ENST00000623007 PSG8Q9UQ74 426 aa12.64□□□□□ -0.39
LDB3-208ENST00000623007 C19orf71A6NCJ1 209 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 H3BTX0 84 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 IGLV2-11P01706 119 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 SNRPCP09234 159 aaKnown RBP12.63□□□□□ -0.39
LDB3-208ENST00000623007 S100A2P29034 98 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 SCGB2A2Q13296 93 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 COX8CQ7Z4L0 72 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 KRTAP1-3Q8IUG1 177 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 GBGT1Q8N5D6 347 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 FOXC2Q99958 501 aa12.63□□□□□ -0.39
LDB3-208ENST00000623007 CLPSL1A2RUU4 121 aa12.62□□□□□ -0.39
LDB3-208ENST00000623007 NPIPB6E9PJ23 425 aa12.62□□□□□ -0.39
LDB3-208ENST00000623007 SMIM6P0DI80 62 aa12.62□□□□□ -0.39
LDB3-208ENST00000623007 Q6AWC8 147 aa12.62□□□□□ -0.39
LDB3-208ENST00000623007 PRR27Q6MZM9 219 aa12.62□□□□□ -0.39
LDB3-208ENST00000623007 PRNTQ86SH4 94 aa12.62□□□□□ -0.39
LDB3-208ENST00000623007 BCL6BQ8N143 479 aaPredicted RBP12.62□□□□□ -0.39
LDB3-208ENST00000623007 CIARTQ8N365 385 aaPredicted RBP12.62□□□□□ -0.39
LDB3-208ENST00000623007 NDFIP1Q9BT67 221 aa12.62□□□□□ -0.39
LDB3-208ENST00000623007 FLNBO75369 2602 aaKnown RBP12.62□□□□□ -0.39
LDB3-208ENST00000623007 ABCA1O95477 2261 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 XKRY2A2RUG3 117 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 CYSRT1A8MQ03 144 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 ELANEP08246 267 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 NHLRC2Q8NBF2 726 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 OR4X2Q8NGF9 303 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 C17orf77Q96MU5 243 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 NOL4LQ96MY1 436 aaPredicted RBP12.61□□□□□ -0.39
LDB3-208ENST00000623007 LINC00527Q9UJ94 153 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 CR1P17927 2039 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 K7EMT4 169 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 PSMB8P28062 276 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 FAM106AQ4KMX7 169 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 C16orf54Q6UWD8 224 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 MAPK1IP1LQ8NDC0 245 aa12.61□□□□□ -0.39
LDB3-208ENST00000623007 PEF1Q9UBV8 284 aaKnown RBP12.61□□□□□ -0.39
LDB3-208ENST00000623007 FOXE3Q13461 319 aa12.6□□□□□ -0.39
LDB3-208ENST00000623007 SMUG1Q53HV7 270 aa12.6□□□□□ -0.39
LDB3-208ENST00000623007 LINC00518Q8N0U6 118 aa12.6□□□□□ -0.39
LDB3-208ENST00000623007 SMAD5-AS1Q9Y6J3 95 aa12.6□□□□□ -0.39
LDB3-208ENST00000623007 SPG11Q96JI7 2443 aa12.59□□□□□ -0.39
LDB3-208ENST00000623007 COL12A1Q99715 3063 aa12.59□□□□□ -0.39
LDB3-208ENST00000623007 ANKRD17O75179 2603 aaKnown RBP12.59□□□□□ -0.39
LDB3-208ENST00000623007 A0A1B0GW15 77 aa12.58□□□□□ -0.4
LDB3-208ENST00000623007 SNURFLB1AK76 121 aa12.58□□□□□ -0.4
LDB3-208ENST00000623007 CHEK1O14757 476 aa12.58□□□□□ -0.4
LDB3-208ENST00000623007 GPHB5Q86YW7 130 aa12.58□□□□□ -0.4
LDB3-208ENST00000623007 MRPL18Q9H0U6 180 aaKnown RBP12.58□□□□□ -0.4
LDB3-208ENST00000623007 IGHV3-35A0A0C4DH35 117 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 FOXA3P55318 350 aaPredicted RBP12.57□□□□□ -0.4
LDB3-208ENST00000623007 RPS20P60866 119 aaKnown RBP12.57□□□□□ -0.4
LDB3-208ENST00000623007 LCN12Q6JVE5 192 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms