RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OVOL3O00110 214 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 AMY1AP04745 511 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 LINC00310P59036 64 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 BAGE3Q86Y29 109 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 C5orf17Q8NAS9 161 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 NUP35Q8NFH5 326 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 CMTM2Q8TAZ6 248 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 GPR82Q96P67 336 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 CCL19Q99731 98 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 FBXL7Q9UJT9 491 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 HIGD1CA8MV81 97 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 ATP6V0E1O15342 81 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 SERF1AO75920 110 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 PPBPP02775 128 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 RPLP1P05386 114 aaKnown RBP8.32□□□□□ -1.08
CUX1-221ENST00000622516 HIST1H1EP10412 219 aaKnown RBP8.32□□□□□ -1.08
CUX1-221ENST00000622516 MFAP4P55083 255 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 UNQ5815/PRO19632Q6UWF5 114 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 TMEM136Q6ZRR5 245 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 TTC9CQ8N5M4 171 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 TMEM18Q96B42 140 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 SRSF8Q9BRL6 282 aaKnown RBP8.32□□□□□ -1.08
CUX1-221ENST00000622516 SHANK2-AS3Q9BTD1 123 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 CSTL1Q9H114 145 aa8.32□□□□□ -1.08
CUX1-221ENST00000622516 IGHV3OR16-13A0A075B7E8 117 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 IGHV3-74A0A0B4J1X5 117 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 TOMM40O96008 361 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 SLAQ13239 276 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 BPIFA4PQ86YQ2 179 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 C7orf69Q9H7B7 122 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 NPIPB5A8MRT5 1133 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 NPFFO15130 113 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 EBI3Q14213 229 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 GDF5OSQ5U4N7 250 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 TRBV19A0A075B6N1 114 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 IGHV3-66A0A0C4DH42 116 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 H3BRN7 92 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 CTSGP08311 255 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 GPR183P32249 361 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 C15orf32Q32M92 178 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 GNB1LQ9BYB4 327 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 GNB4Q9HAV0 340 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 MXRA5Q9NR99 2828 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 KLF12Q9Y4X4 402 aa8.31□□□□□ -1.08
CUX1-221ENST00000622516 ZNF469Q96JG9 3925 aaPredicted RBP8.3□□□□□ -1.08
CUX1-221ENST00000622516 TRAV40A0A0B4J280 105 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 HLA-DRB1P01911 266 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 SRIP30626 198 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 ATP5J2P56134 94 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 RNF151Q2KHN1 245 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 OR4F17Q8NGA8 305 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 MBD6Q96DN6 1003 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 RCHY1Q96PM5 261 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 MLST8Q9BVC4 326 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 IGHV3-49A0A0A0MS15 119 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 IZUMO1RA6ND01 250 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 SCGB1D1O95968 90 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 IGLV2-11P01706 119 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 CLEC3BP05452 202 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 IGLC2P0DOY2 106 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 BRS3P32247 399 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 RPL19P84098 196 aaKnown RBP8.3□□□□□ -1.08
CUX1-221ENST00000622516 ZNF331Q9NQX6 463 aaPredicted RBP8.3□□□□□ -1.08
CUX1-221ENST00000622516 NAV2Q8IVL1 2488 aa8.3□□□□□ -1.08
CUX1-221ENST00000622516 TRAV9-1A0A075B6T8 112 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 IGHV4-30-2A0A087WSY4 118 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 WI2-2373I1.2A0A1W2PRP0 233 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 OOSP1A8MZH6 123 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 BMPR1BO00238 502 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 LTAP01374 205 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 IQCJQ1A5X6 159 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 PRSS57Q6UWY2 283 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 OR2D3Q8NGH3 330 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 GTSF1Q8WW33 167 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 GRAMD2BQ96HH9 432 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 PGLYRP4Q96LB8 373 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 OTORQ9NRC9 128 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 THYN1Q9P016 225 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 TBL2Q9Y4P3 447 aaKnown RBP8.29□□□□□ -1.08
CUX1-221ENST00000622516 K7EP13 123 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 P01737 135 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 IGHV4-38-2P0DP08 117 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 RHOGP84095 191 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 LY6EQ16553 131 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 SIGLEC15Q6ZMC9 328 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 FMC1Q96HJ9 113 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 ZNF414Q96IQ9 312 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 C1RLQ9NZP8 487 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 TMEM14CQ9P0S9 112 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 TEX15Q9BXT5 2789 aa8.29□□□□□ -1.08
CUX1-221ENST00000622516 ZNF207O43670 478 aaKnown RBP8.28□□□□□ -1.08
CUX1-221ENST00000622516 ZNF253O75346 499 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 HLA-DMBP28068 263 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 DAZAP1Q96EP5 407 aaKnown RBP8.28□□□□□ -1.08
CUX1-221ENST00000622516 MRPS12O15235 138 aaKnown RBP8.28□□□□□ -1.08
CUX1-221ENST00000622516 APCSP02743 223 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 COL8A1P27658 744 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 CLEC19AQ6UXS0 136 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 FAM231DQ6ZW35 169 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 Q86TA4 180 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms