RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 CCDC140Q96MF4 163 aa5.82□□□□□ -1.48
CLK1-215ENST00000621181 CIB3Q96Q77 187 aaPredicted RBP5.82□□□□□ -1.48
CLK1-215ENST00000621181 SLC39A9Q9NUM3 307 aa5.82□□□□□ -1.48
CLK1-215ENST00000621181 NAT8Q9UHE5 227 aa5.82□□□□□ -1.48
CLK1-215ENST00000621181 WDR83OSQ9Y284 106 aa5.82□□□□□ -1.48
CLK1-215ENST00000621181 DMRT1Q9Y5R6 373 aa5.82□□□□□ -1.48
CLK1-215ENST00000621181 CYB5BO43169 146 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 FCGR3BO75015 233 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 IFNA1P01562 189 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 MBP02144 154 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 TRGC1P0CF51 173 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 DEFA4P12838 97 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 NDUFA6P56556 154 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 RPL23P62829 140 aaKnown RBP5.81□□□□□ -1.48
CLK1-215ENST00000621181 GFI1BQ5VTD9 330 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 C19orf35Q6ZS72 473 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 GATAD1Q8WUU5 269 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 TMEM170AQ8WVE7 144 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 EEF1AKMT3Q96AZ1 226 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 NPCDR1Q9BY65 106 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 PCLOQ9Y6V0 5065 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 MARCH11A6NNE9 402 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 NPIPB5A8MRT5 1133 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 RBFOX2O43251 390 aaKnown RBP eCLIP5.81□□□□□ -1.48
CLK1-215ENST00000621181 FGF7P21781 194 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 TMEM241Q24JQ0 296 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 COA6Q5JTJ3 125 aaKnown RBP5.81□□□□□ -1.48
CLK1-215ENST00000621181 CDPF1Q6NVV7 123 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 H2BFWTQ7Z2G1 175 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 VKORC1L1Q8N0U8 176 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 STPG3Q8N7X2 389 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 OR10P1Q8NGE3 313 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 OR51G1Q8NGK1 321 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 OR10G9Q8NGN4 311 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 OR10G7Q8NGN6 311 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 OR52E5Q8NH55 327 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 VSTM2AQ8TAG5 236 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 RAB24Q969Q5 203 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 QTRT1Q9BXR0 403 aaKnown RBP5.81□□□□□ -1.48
CLK1-215ENST00000621181 ACTR3CQ9C0K3 210 aaPredicted RBP5.81□□□□□ -1.48
CLK1-215ENST00000621181 SLC25A22Q9H936 323 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 MANBALQ9NQG1 85 aa5.81□□□□□ -1.48
CLK1-215ENST00000621181 ALMS1Q8TCU4 4167 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 TRBV7-1A0A0A6YYK4 115 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 TRAV25A0A0B4J276 109 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 IGHV3-35A0A0C4DH35 117 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 TEX22C9J3V5 150 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 CLEC3BP05452 202 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 RPL27AP46776 148 aaKnown RBP5.8□□□□□ -1.48
CLK1-215ENST00000621181 FFAR4Q5NUL3 377 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 UNQ9165/PRO28630Q6UXU0 137 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 OR4X1Q8NH49 305 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 FANCD2OSQ96PS1 177 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 SPAG8Q99932 426 aaPredicted RBP5.8□□□□□ -1.48
CLK1-215ENST00000621181 SMIM7Q9BQ49 75 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 PARLQ9H300 379 aa5.8□□□□□ -1.48
CLK1-215ENST00000621181 KIR2DL5BA0A0G2JN68 375 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 KIR2DL5BA0A0G2JPC4 375 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 SMCO3A2RU48 225 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 HMGB3O15347 200 aaKnown RBP5.79□□□□□ -1.48
CLK1-215ENST00000621181 HPRT1P00492 218 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 REG1AP05451 166 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 IL6RP08887 468 aaPredicted RBP5.79□□□□□ -1.48
CLK1-215ENST00000621181 MYOD1P15172 320 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 AREGP15514 252 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 RPL35AP18077 110 aaKnown RBP5.79□□□□□ -1.48
CLK1-215ENST00000621181 PSMB3P49720 205 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 SPCS3P61009 180 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 BSXQ3C1V8 233 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 KIR2DL5AQ8N109 375 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 OR4S2Q8NH73 311 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 KIR2DL5BQ8NHK3 375 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 RNF183Q96D59 192 aa5.79□□□□□ -1.48
CLK1-215ENST00000621181 MRPL27Q9P0M9 148 aaKnown RBP5.79□□□□□ -1.48
CLK1-215ENST00000621181 TRAV3A0A0B4J244 114 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 E7EUB6 86 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 PAGE4O60829 102 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 TYMSP04818 313 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 HIST1H1BP16401 226 aaKnown RBP5.78□□□□□ -1.48
CLK1-215ENST00000621181 GPR183P32249 361 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 SPINK9Q5DT21 86 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 GCSAMLQ5JQS6 135 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 OR10D4PQ8NGN7 298 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 UFC1Q9Y3C8 167 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 PPP1R2P9O14990 202 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 MPDU1O75352 247 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 CRYGCP07315 174 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 C8orf88P0DMB2 117 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 OPRK1P41145 380 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 ADIRFQ15847 76 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 ACOT6Q3I5F7 207 aaPredicted RBP5.78□□□□□ -1.48
CLK1-215ENST00000621181 SSX9Q7RTT3 188 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 RPUSD4Q96CM3 377 aaKnown RBP5.78□□□□□ -1.48
CLK1-215ENST00000621181 ANAPC16Q96DE5 110 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 MGST2Q99735 147 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 HIST1H2BLQ99880 126 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 THYN1Q9P016 225 aa5.78□□□□□ -1.48
CLK1-215ENST00000621181 IGLV11-55A0A075B6I3 123 aa5.77□□□□□ -1.49
CLK1-215ENST00000621181 C17orf112F2Z3M2 114 aa5.77□□□□□ -1.49
CLK1-215ENST00000621181 HRASP01112 189 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms