RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZNF503Q96F45 646 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 GPR61Q9BZJ8 451 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 NIT2Q9NQR4 276 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 FAM181BA6NEQ2 426 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 TM4SF20Q53R12 229 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 Q6ZS46 218 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 BTF3L4Q96K17 158 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 SRD5A3Q9H8P0 318 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 TMEM78Q5T7P6 136 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 GFI1BQ5VTD9 330 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 ATG101Q9BSB4 218 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 S100A4P26447 101 aaKnown RBP12.29□□□□□ -0.44
CPSF1-213ENST00000620219 PSG9Q00887 426 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 OR4B1Q8NGF8 309 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 INS-IGF2F8WCM5 200 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 CTSGP08311 255 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 HIST2H2BDQ6DRA6 164 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 OTORQ9NRC9 128 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 VPREB3Q9UKI3 123 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 GRIFINA4D1Z8 144 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 VWC2LB2RUY7 222 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 YPEL3P61236 119 aaPredicted RBP12.29□□□□□ -0.44
CPSF1-213ENST00000620219 SCGB2A2Q13296 93 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 Q8TAT8 98 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 VN1R17PQ8TDU5 208 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 CELSR2Q9HCU4 2923 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 BMI1P35226 326 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 PGLYRP4Q96LB8 373 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 DMRT1Q9Y5R6 373 aa12.29□□□□□ -0.44
CPSF1-213ENST00000620219 FXYD5Q96DB9 178 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 GPR82Q96P67 336 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 DUX3Q96PT4 197 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 CELSR1Q9NYQ6 3014 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 ZNF705FA8MVS1 300 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-213ENST00000620219 CRYGCP07315 174 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 RAB9AP51151 201 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H1AQ02539 215 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-213ENST00000620219 RNF182Q8N6D2 247 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BKO60814 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 TCRAP04437 139 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BJP06899 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BOP23527 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BBP33778 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BDP58876 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BCP62807 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST2H2BEQ16778 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 MRGPRG-AS1Q2M3A8 158 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BHQ93079 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 FAM167A-AS1Q96KT0 104 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BNQ99877 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 HIST1H2BMQ99879 126 aa12.28□□□□□ -0.44
CPSF1-213ENST00000620219 CD33P20138 364 aa12.27□□□□□ -0.44
CPSF1-213ENST00000620219 SYNJ2BPP57105 145 aa12.27□□□□□ -0.44
CPSF1-213ENST00000620219 ZNF586Q9NXT0 402 aa12.27□□□□□ -0.44
CPSF1-213ENST00000620219 NTF3P20783 257 aa12.27□□□□□ -0.45
CPSF1-213ENST00000620219 EBI3Q14213 229 aa12.27□□□□□ -0.45
CPSF1-213ENST00000620219 FAM223BA6NKX1 122 aa12.27□□□□□ -0.45
CPSF1-213ENST00000620219 TRBV12-3P01733 135 aa12.27□□□□□ -0.45
CPSF1-213ENST00000620219 FAM223AQ8IWN6 122 aa12.27□□□□□ -0.45
CPSF1-213ENST00000620219 RPLP1P05386 114 aaKnown RBP12.26□□□□□ -0.45
CPSF1-213ENST00000620219 HLA-DMBP28068 263 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 RBPMS2Q6ZRY4 209 aaKnown RBP12.26□□□□□ -0.45
CPSF1-213ENST00000620219 A6NDX4 124 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 ZNF705DP0CH99 300 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-213ENST00000620219 ZNF705BP0CI00 300 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-213ENST00000620219 DEFB136Q30KP8 78 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 C10orf99Q6UWK7 81 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 USMG5Q96IX5 58 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 PEF1Q9UBV8 284 aaKnown RBP12.26□□□□□ -0.45
CPSF1-213ENST00000620219 K7EN84 100 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 SIGLEC15Q6ZMC9 328 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 Q8N6K4 173 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 PSG8Q9UQ74 426 aa12.26□□□□□ -0.45
CPSF1-213ENST00000620219 GZMBP10144 247 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 TAS2R60P59551 318 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 TCF24Q7RTU0 167 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 MEGF9Q9H1U4 602 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 A8MWL6 223 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 ADMP35318 185 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 OR10J6PQ8NGY7 276 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 ZNF502Q8TBZ5 544 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 GCGP01275 180 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 PAFAH1B2P68402 229 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 TXN2Q99757 166 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 RHPN1-AS1Q9BWJ2 59 aa12.25□□□□□ -0.45
CPSF1-213ENST00000620219 C2CD3Q4AC94 2353 aa12.24□□□□□ -0.45
CPSF1-213ENST00000620219 CSN3P07498 182 aa12.24□□□□□ -0.45
CPSF1-213ENST00000620219 KLHL30-AS1Q8NEE0 82 aa12.24□□□□□ -0.45
CPSF1-213ENST00000620219 H3BRN7 92 aa12.24□□□□□ -0.45
CPSF1-213ENST00000620219 PFN1P07737 140 aaKnown RBP12.24□□□□□ -0.45
CPSF1-213ENST00000620219 TRBV19A0A075B6N1 114 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 TMEM189A5PLL7 270 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 PMS2P11Q13670 270 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 CDC42EP3Q9UKI2 254 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 IGHG2P01859 326 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 FMC1Q96HJ9 113 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 UNC79Q9P2D8 2635 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 LRRC75A-AS1Q8N1F1 130 aa12.23□□□□□ -0.45
CPSF1-213ENST00000620219 KLHDC1Q8N7A1 406 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms