RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CDC34P49427 236 aaPredicted RBP14.67□□□□□ -0.06
UPF3A-211ENST00000618700 KHDC3LQ587J8 217 aa14.67□□□□□ -0.06
UPF3A-211ENST00000618700 ZNF503Q96F45 646 aa14.67□□□□□ -0.06
UPF3A-211ENST00000618700 WFDC10AQ9H1F0 79 aa14.67□□□□□ -0.06
UPF3A-211ENST00000618700 HRH4Q9H3N8 390 aa14.67□□□□□ -0.06
UPF3A-211ENST00000618700 MAP6D1Q9H9H5 199 aa14.67□□□□□ -0.06
UPF3A-211ENST00000618700 H3BQ15 152 aa14.66□□□□□ -0.06
UPF3A-211ENST00000618700 ISLRO14498 428 aa14.66□□□□□ -0.06
UPF3A-211ENST00000618700 EIF3GO75821 320 aaKnown RBP eCLIP14.66□□□□□ -0.06
UPF3A-211ENST00000618700 ZNF688P0C7X2 276 aa14.66□□□□□ -0.06
UPF3A-211ENST00000618700 TAS2R45P59539 299 aa14.66□□□□□ -0.06
UPF3A-211ENST00000618700 TMED6Q8WW62 240 aa14.66□□□□□ -0.06
UPF3A-211ENST00000618700 UBQLN2Q9UHD9 624 aa14.66□□□□□ -0.06
UPF3A-211ENST00000618700 HIST1H1EP10412 219 aaKnown RBP14.65□□□□□ -0.06
UPF3A-211ENST00000618700 PSMB3P49720 205 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 ZNF726P1Q15940 193 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 GUK1Q16774 197 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 LCN15Q6UWW0 184 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 SSX7Q7RTT5 188 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 RAB24Q969Q5 203 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 PAXXQ9BUH6 204 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 ACTR3CQ9C0K3 210 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-211ENST00000618700 OR51M1Q9H341 326 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 ZNF586Q9NXT0 402 aa14.65□□□□□ -0.06
UPF3A-211ENST00000618700 TRAV8-2A0A0B4J237 113 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 OR11H12B2RN74 326 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 UMAD1C9J7I0 102 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 OR7C2O60412 319 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 STAG3L2P0CL84 134 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 STAG3L3P0CL85 134 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 CMC4P56277 68 aaPredicted RBP14.64□□□□□ -0.07
UPF3A-211ENST00000618700 SNRPD3P62318 126 aaKnown RBP14.64□□□□□ -0.07
UPF3A-211ENST00000618700 PQLC2Q6ZP29 291 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 FXYD5Q96DB9 178 aa14.64□□□□□ -0.07
UPF3A-211ENST00000618700 SAT2Q96F10 170 aaPredicted RBP14.64□□□□□ -0.07
UPF3A-211ENST00000618700 TRBV19A0A075B6N1 114 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 SLC17A3O00476 420 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 HMGB3O15347 200 aaKnown RBP14.63□□□□□ -0.07
UPF3A-211ENST00000618700 ZNF253O75346 499 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 SNRPCP09234 159 aaKnown RBP14.63□□□□□ -0.07
UPF3A-211ENST00000618700 ID1P41134 155 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 DEFB131AP59861 70 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 EIF5AL1Q6IS14 154 aaKnown RBP14.63□□□□□ -0.07
UPF3A-211ENST00000618700 DEFB125Q8N687 156 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 RNF141Q8WVD5 230 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 C16orf92Q96LL3 132 aa14.63□□□□□ -0.07
UPF3A-211ENST00000618700 ZNF331Q9NQX6 463 aaPredicted RBP14.63□□□□□ -0.07
UPF3A-211ENST00000618700 CTXND1A0A1B0GTU2 59 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 H3BTX0 84 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 OR10J4P0C629 311 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 ARL14EPLP0DKL9 152 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 IGHV4-30-4P0DP06 118 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 UBE2L3P68036 154 aaKnown RBP14.62□□□□□ -0.07
UPF3A-211ENST00000618700 PDE6HQ13956 83 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 PSMG4Q5JS54 123 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 C20orf173Q96LM9 149 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 CITED4Q96RK1 184 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 SLC50A1Q9BRV3 221 aa14.62□□□□□ -0.07
UPF3A-211ENST00000618700 PRKDCP78527 4128 aaKnown RBP14.61□□□□□ -0.07
UPF3A-211ENST00000618700 A8MZ25 164 aa14.61□□□□□ -0.07
UPF3A-211ENST00000618700 NDUFB4O95168 129 aa14.61□□□□□ -0.07
UPF3A-211ENST00000618700 FHITP49789 147 aa14.61□□□□□ -0.07
UPF3A-211ENST00000618700 DPPA3Q6W0C5 159 aa14.61□□□□□ -0.07
UPF3A-211ENST00000618700 APRG1Q8IVJ8 170 aa14.61□□□□□ -0.07
UPF3A-211ENST00000618700 PHYHIPLQ96FC7 376 aa14.61□□□□□ -0.07
UPF3A-211ENST00000618700 NBEAP1P0C6P0 100 aa14.6□□□□□ -0.07
UPF3A-211ENST00000618700 ZNF124Q15973 351 aa14.6□□□□□ -0.07
UPF3A-211ENST00000618700 LRRC20Q8TCA0 184 aa14.6□□□□□ -0.07
UPF3A-211ENST00000618700 SRD5A3Q9H8P0 318 aa14.6□□□□□ -0.07
UPF3A-211ENST00000618700 CXorf1O96002 111 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 HLA-DMBP28068 263 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 SULT1A2P50226 295 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 RAB5CP51148 216 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 IGFL4Q6B9Z1 124 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 RNF182Q8N6D2 247 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 FAM213BQ8TBF2 198 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 SUN5Q8TC36 379 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 MRAPQ8TCY5 172 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 BLNKQ8WV28 456 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 LINC00052Q96N35 136 aa14.59□□□□□ -0.07
UPF3A-211ENST00000618700 GCHFRP30047 84 aa14.58□□□□□ -0.08
UPF3A-211ENST00000618700 CLEC5AQ9NY25 188 aa14.58□□□□□ -0.08
UPF3A-211ENST00000618700 MAP1LC3B2A6NCE7 125 aa14.57□□□□□ -0.08
UPF3A-211ENST00000618700 PSG9Q00887 426 aa14.57□□□□□ -0.08
UPF3A-211ENST00000618700 PSG3Q16557 428 aa14.57□□□□□ -0.08
UPF3A-211ENST00000618700 MBD3L1Q8WWY6 194 aa14.57□□□□□ -0.08
UPF3A-211ENST00000618700 MAP1LC3BQ9GZQ8 125 aa14.57□□□□□ -0.08
UPF3A-211ENST00000618700 DEFB1P60022 68 aa14.56□□□□□ -0.08
UPF3A-211ENST00000618700 FAM74A1Q5RGS3 127 aa14.56□□□□□ -0.08
UPF3A-211ENST00000618700 ALKAL2Q6UX46 152 aa14.56□□□□□ -0.08
UPF3A-211ENST00000618700 LINC00322Q6ZN03 302 aaPredicted RBP14.56□□□□□ -0.08
UPF3A-211ENST00000618700 MRPL53Q96EL3 112 aaKnown RBP14.56□□□□□ -0.08
UPF3A-211ENST00000618700 TUBA4BQ9H853 241 aa14.56□□□□□ -0.08
UPF3A-211ENST00000618700 RBMY1BA6NDE4 496 aaKnown RBP14.55□□□□□ -0.08
UPF3A-211ENST00000618700 RBMY1EA6NEQ0 496 aaKnown RBP14.55□□□□□ -0.08
UPF3A-211ENST00000618700 KNCNA6PVL3 124 aa14.55□□□□□ -0.08
UPF3A-211ENST00000618700 RBMY1DP0C7P1 496 aaKnown RBP14.55□□□□□ -0.08
UPF3A-211ENST00000618700 FRMD6-AS1P0C7T7 363 aa14.55□□□□□ -0.08
UPF3A-211ENST00000618700 FGF8P55075 233 aaPredicted RBP14.55□□□□□ -0.08
UPF3A-211ENST00000618700 GDF5OSQ5U4N7 250 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms