RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 A6NHS1 94 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 SNURFLB1AK76 121 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 SFT2D2O95562 160 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 PRM2P04554 102 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 M6PRP20645 277 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 PYDC2Q56P42 97 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 PXDC1Q5TGL8 231 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 MCFD2Q8NI22 146 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 TMEM263Q8WUH6 116 aaKnown RBP6.71□□□□□ -1.34
VRK3-224ENST00000601849 RNF141Q8WVD5 230 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 NOP10Q9NPE3 64 aaKnown RBP6.71□□□□□ -1.34
VRK3-224ENST00000601849 SCRT2Q9NQ03 307 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 PSENENQ9NZ42 101 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 PTTG2Q9NZH5 202 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 MGAT4CQ9UBM8 478 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 LINC00588Q9Y4M8 146 aa6.71□□□□□ -1.34
VRK3-224ENST00000601849 A0A087X0K7 114 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 TRAV8-2A0A0B4J237 113 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 A0A1W2PPQ1 181 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 H3BP45 60 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 H3BRN7 92 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 GOSR2O14653 212 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 EREGO14944 169 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 RLN2P04090 185 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 LINC00869P0C866 280 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 CXCL2P19875 107 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 CXCL3P19876 107 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 TNFSF8P32971 234 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 PLP1P60201 277 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 TEPPQ6URK8 271 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 LCN15Q6UWW0 184 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 ACOT7LQ6ZUV0 252 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 SPATA12Q7Z6I5 190 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 CCDC190Q86UF4 302 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 Q8N1X5 172 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 OR10P1Q8NGE3 313 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 RXFP4Q8TDU9 374 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 RPUSD4Q96CM3 377 aaKnown RBP6.7□□□□□ -1.34
VRK3-224ENST00000601849 SOSTQ9BQB4 213 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 SLC50A1Q9BRV3 221 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 ARL6Q9H0F7 186 aa6.7□□□□□ -1.34
VRK3-224ENST00000601849 TRAV26-1A0A087WT03 109 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 PRSS46E5RG02 174 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 H3BNG1 76 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 S100A5P33763 92 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 INPP1P49441 399 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 UBE2MP61081 183 aaKnown RBP6.69□□□□□ -1.34
VRK3-224ENST00000601849 TMEM182Q6ZP80 229 aaPredicted RBP6.69□□□□□ -1.34
VRK3-224ENST00000601849 BPIFA4PQ86YQ2 179 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 KRTAP4-5Q9BYR2 181 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 ARV1Q9H2C2 271 aa6.69□□□□□ -1.34
VRK3-224ENST00000601849 APOBP04114 4563 aaKnown RBP6.68□□□□□ -1.34
VRK3-224ENST00000601849 PLAC8L1A1L4L8 177 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 PMS2P5A8MQ11 134 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 FNDC10F2Z333 226 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 ID3Q02535 119 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 PPP1R1AQ13522 171 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 RAB31Q13636 194 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 LINC00305Q7Z4B0 112 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 ZNF546Q86UE3 836 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 RNASE8Q8TDE3 154 aaKnown RBP6.68□□□□□ -1.34
VRK3-224ENST00000601849 SMIM8Q96KF7 97 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 C17orf77Q96MU5 243 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 UHRF2Q96PU4 802 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 UPK3BQ9BT76 320 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 Q9H3A6 140 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 NACAE9PAV3 2078 aa6.68□□□□□ -1.34
VRK3-224ENST00000601849 A0A0J9YY99 117 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 GAGE12BA1L429 117 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 SSSCA1O60232 199 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 COX7A2P2O60397 106 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 GAGE7O76087 117 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 GAGE12FP0CL80 117 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 GAGE12GP0CL81 117 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 GAGE12IP0CL82 117 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 LEPP41159 167 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 RRAS2P62070 204 aaPredicted RBP6.67□□□□□ -1.34
VRK3-224ENST00000601849 POLR2GP62487 172 aaKnown RBP eCLIP6.67□□□□□ -1.34
VRK3-224ENST00000601849 DLK1P80370 383 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 GUK1Q16774 197 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 Q6ZRG5 221 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 ZNF331Q9NQX6 463 aaPredicted RBP6.67□□□□□ -1.34
VRK3-224ENST00000601849 PGPEP1Q9NXJ5 209 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 PXMP4Q9Y6I8 212 aa6.67□□□□□ -1.34
VRK3-224ENST00000601849 TRGV2A0A075B6R0 118 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 CENPXA8MT69 81 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 K7EPK0 472 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 TAS2R30P59541 319 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 ESRGQ1W209 222 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 C4orf46Q504U0 113 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 ZBTB8BQ8NAP8 495 aaPredicted RBP6.66□□□□□ -1.34
VRK3-224ENST00000601849 PYGO2Q9BRQ0 406 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 GGACTQ9BVM4 153 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 MRPS16Q9Y3D3 137 aaKnown RBP6.66□□□□□ -1.34
VRK3-224ENST00000601849 V9GYH0 126 aa6.66□□□□□ -1.34
VRK3-224ENST00000601849 TRAV9-2A0A087WT02 112 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 C9orf170A2RU37 121 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 NAP1L6A6NFF2 107 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 TSC22D2O75157 780 aa6.65□□□□□ -1.34
VRK3-224ENST00000601849 SCGB1D2O95969 90 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms