RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ETV2O00321 342 aaPredicted RBP16.5■□□□□ 0.23
UPF1-207ENST00000599848 GAGE1Q13065 139 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 GAGE4Q13068 117 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 GAGE5Q13069 117 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 GAGE13Q4V321 117 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 SLX1AQ9BQ83 275 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 CHAC1Q9BUX1 264 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 TMEM242Q9NWH2 141 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 RIF1Q5UIP0 2472 aaKnown RBP16.5■□□□□ 0.23
UPF1-207ENST00000599848 LAIR2Q6ISS4 152 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 LURAP1LQ8IV03 231 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 TMEM141Q96I45 108 aa16.5■□□□□ 0.23
UPF1-207ENST00000599848 SSBP2P81877 361 aaPredicted RBP16.49■□□□□ 0.23
UPF1-207ENST00000599848 RNF126Q9BV68 326 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 OTOFQ9HC10 1997 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 ZNF833PQ6ZTB9 187 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 F8VVB4 439 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 F8VWA3 439 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 SERF1AO75920 110 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 NIT1Q86X76 327 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 D6R8Y8 96 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 GREB1LQ9C091 1923 aaPredicted RBP16.49■□□□□ 0.23
UPF1-207ENST00000599848 AGMATQ9BSE5 352 aa16.49■□□□□ 0.23
UPF1-207ENST00000599848 FAM19A2Q8N3H0 131 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 TMEM75Q8N9X5 138 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 TRAV8-4A0A0B4J246 113 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 CCL18P55774 89 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 ARID2Q68CP9 1835 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 IGLV3-9A0A075B6K5 115 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 IGLV1-44P01699 117 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 CT83Q5H943 113 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 I3L3M4 83 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 IGKV1-5P01602 117 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 RHOHQ15669 191 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 C14orf144Q96I85 54 aa16.48■□□□□ 0.23
UPF1-207ENST00000599848 DOPEY2Q9Y3R5 2298 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 GAGE12BA1L429 117 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 GAGE7O76087 117 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 GAGE12FP0CL80 117 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 GAGE12GP0CL81 117 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 GAGE12IP0CL82 117 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 CTAG1AP78358 180 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 LOXP28300 417 aaPredicted RBP16.47■□□□□ 0.23
UPF1-207ENST00000599848 SPTBN2O15020 2390 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 A0A1W2PPI3 338 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 ARMS2P0C7Q2 107 aa16.47■□□□□ 0.23
UPF1-207ENST00000599848 RBMY1FQ15415 496 aaKnown RBP16.46■□□□□ 0.23
UPF1-207ENST00000599848 CACNA1IQ9P0X4 2223 aa16.46■□□□□ 0.23
UPF1-207ENST00000599848 LINC00473A8K010 186 aa16.46■□□□□ 0.23
UPF1-207ENST00000599848 IGHV2-5P01817 119 aa16.46■□□□□ 0.23
UPF1-207ENST00000599848 FOXE3Q13461 319 aa16.46■□□□□ 0.23
UPF1-207ENST00000599848 ORAOV1Q8WV07 137 aa16.46■□□□□ 0.23
UPF1-207ENST00000599848 ADMP35318 185 aa16.46■□□□□ 0.23
UPF1-207ENST00000599848 KLF5Q13887 457 aaPredicted RBP16.46■□□□□ 0.23
UPF1-207ENST00000599848 RNF152Q8N8N0 203 aa16.46■□□□□ 0.23
UPF1-207ENST00000599848 IGKV1D-8A0A087WSZ0 117 aa16.46■□□□□ 0.22
UPF1-207ENST00000599848 A0A1B0GW64 132 aa16.46■□□□□ 0.22
UPF1-207ENST00000599848 LDLRAD4O15165 306 aa16.46■□□□□ 0.22
UPF1-207ENST00000599848 LHFPL4Q7Z7J7 247 aa16.46■□□□□ 0.22
UPF1-207ENST00000599848 FAM231BA6NCW3 169 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 SPINK13Q1W4C9 94 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 Q8TAT8 98 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 IGHV3-64A0A075B6Q5 118 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 TRAV3A0A0B4J244 114 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 IGHV7-4-1A0A0J9YVY3 117 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 CCL24O00175 119 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 Q5BKY6 102 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 FOXI2Q6ZQN5 318 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 Q86TA4 180 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 C8orf31Q8N9H6 132 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 CHD5Q8TDI0 1954 aa16.45■□□□□ 0.22
UPF1-207ENST00000599848 PAX9P55771 341 aa16.44■□□□□ 0.22
UPF1-207ENST00000599848 DKK4Q9UBT3 224 aa16.44■□□□□ 0.22
UPF1-207ENST00000599848 PLA2G5P39877 138 aa16.44■□□□□ 0.22
UPF1-207ENST00000599848 C5orf63A6NC05 138 aa16.44■□□□□ 0.22
UPF1-207ENST00000599848 ZNF48Q96MX3 618 aaPredicted RBP16.44■□□□□ 0.22
UPF1-207ENST00000599848 ZNF492Q9P255 531 aa16.44■□□□□ 0.22
UPF1-207ENST00000599848 DAZAP2Q15038 168 aaPredicted RBP16.43■□□□□ 0.22
UPF1-207ENST00000599848 SNAI2O43623 268 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 SPAG8Q99932 426 aaPredicted RBP16.43■□□□□ 0.22
UPF1-207ENST00000599848 DOCK4Q8N1I0 1966 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 PIKFYVEQ9Y2I7 2098 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 A0A087WWL8 130 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 LY6G6EA0A0G2JKS1 128 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 CRLF1O75462 422 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 U3KQA8 63 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 TCF15Q12870 199 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 DERL1Q9BUN8 251 aa16.43■□□□□ 0.22
UPF1-207ENST00000599848 ZNF479Q96JC4 524 aa16.42■□□□□ 0.22
UPF1-207ENST00000599848 COL6A6A6NMZ7 2263 aa16.42■□□□□ 0.22
UPF1-207ENST00000599848 FAM215AQ9Y5M1 114 aa16.42■□□□□ 0.22
UPF1-207ENST00000599848 XIRP1Q702N8 1843 aaKnown RBP16.42■□□□□ 0.22
UPF1-207ENST00000599848 SBF1O95248 1867 aa16.42■□□□□ 0.22
UPF1-207ENST00000599848 UBE2BP63146 152 aa16.42■□□□□ 0.22
UPF1-207ENST00000599848 SPTBN1Q01082 2364 aaKnown RBP16.42■□□□□ 0.22
UPF1-207ENST00000599848 NCR2O95944 276 aa16.42■□□□□ 0.22
UPF1-207ENST00000599848 SFTA2Q6UW10 78 aa16.42■□□□□ 0.22
UPF1-207ENST00000599848 NDUFA4L2Q9NRX3 87 aa16.41■□□□□ 0.22
UPF1-207ENST00000599848 DKK1O94907 266 aa16.41■□□□□ 0.22
UPF1-207ENST00000599848 A0A1B0GV72 72 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms