RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 A0A0B4J2A0 478 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 FAM25AB3EWG3 89 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 FAM25CB3EWG5 89 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 FAM25GB3EWG6 89 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 NPIPB6E9PJ23 425 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 GATA2P23769 480 aaPredicted RBP6.87□□□□□ -1.31
TRIM28-210ENST00000597618 RAP2BP61225 183 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 GFI1BQ5VTD9 330 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 DEFB104AQ8WTQ1 72 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 NTN5Q8WTR8 489 aaPredicted RBP6.87□□□□□ -1.31
TRIM28-210ENST00000597618 C15orf40Q8WUR7 153 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 LINC00467Q9BRT7 94 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 SHANK2-AS3Q9BTD1 123 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 MSRB1Q9NZV6 116 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 SHPKQ9UHJ6 478 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 PAIP2BQ9ULR5 123 aaKnown RBP6.87□□□□□ -1.31
TRIM28-210ENST00000597618 KCNIP3Q9Y2W7 256 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 LY96Q9Y6Y9 160 aa6.87□□□□□ -1.31
TRIM28-210ENST00000597618 DISC1C4P0D8 188 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 AKR1C1Q04828 323 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 KIR3DS1Q14943 382 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 FAAP20Q6NZ36 180 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 TMEM182Q6ZP80 229 aaPredicted RBP6.86□□□□□ -1.31
TRIM28-210ENST00000597618 S100A7AQ86SG5 101 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 PRR13Q9NZ81 148 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 PLA2G2DQ9UNK4 145 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 GPR132Q9UNW8 380 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 HIGD1AQ9Y241 93 aa6.86□□□□□ -1.31
TRIM28-210ENST00000597618 FAT3Q8TDW7 4589 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 PAX4O43316 350 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 IAPPP10997 89 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 CXCL2P19875 107 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 EVI2AP22794 236 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 RPP30P78346 268 aaKnown RBP6.85□□□□□ -1.31
TRIM28-210ENST00000597618 SRPXP78539 464 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 MZT2AQ6P582 158 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 LYZL2Q7Z4W2 148 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 CCDC190Q86UF4 302 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 ZNF680Q8NEM1 530 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 YIPF6Q96EC8 236 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 PYGO2Q9BRQ0 406 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 PARD6GQ9BYG4 376 aaPredicted RBP6.85□□□□□ -1.31
TRIM28-210ENST00000597618 EXTL2Q9UBQ6 330 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 RNF24Q9Y225 148 aa6.85□□□□□ -1.31
TRIM28-210ENST00000597618 TRGV1A0A0A0MS02 117 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 PIGBOS1A0A0B4J2F0 54 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 PRSS46E5RG02 174 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 HYPMO75409 117 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 ZNF324O75467 553 aaPredicted RBP6.84□□□□□ -1.31
TRIM28-210ENST00000597618 C1QBP02746 253 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 PRB4P10163 310 aaPredicted RBP6.84□□□□□ -1.31
TRIM28-210ENST00000597618 ANXA3P12429 323 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 LEPP41159 167 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 SSBP1Q04837 148 aaKnown RBP6.84□□□□□ -1.31
TRIM28-210ENST00000597618 LYPD5Q6UWN5 251 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 LCN15Q6UWW0 184 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 AP3S1Q92572 193 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 CIB3Q96Q77 187 aaPredicted RBP6.84□□□□□ -1.31
TRIM28-210ENST00000597618 PRRT1Q99946 306 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 FUT9Q9Y231 359 aa6.84□□□□□ -1.31
TRIM28-210ENST00000597618 TRAV12-3A0A0B4J271 114 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 PSCAO43653 123 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 MED6O75586 246 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 IL5P05113 134 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 OR5G3P0C626 314 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 NCS1P62166 190 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 MRPL23Q16540 153 aaKnown RBP6.83□□□□□ -1.32
TRIM28-210ENST00000597618 CYP2G1PQ6ZSU1 146 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 ACOT7LQ6ZUV0 252 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 LINC00528Q8N1L1 170 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 C10orf126Q8N4M7 172 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 ST6GAL2Q96JF0 529 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 ODF3Q96PU9 254 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 SLC50A1Q9BRV3 221 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 VCX3AQ9NNX9 186 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 ZNF331Q9NQX6 463 aaPredicted RBP6.83□□□□□ -1.32
TRIM28-210ENST00000597618 GSN-AS1Q9NRJ2 163 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 PRO0255Q9UI72 69 aa6.83□□□□□ -1.32
TRIM28-210ENST00000597618 DUXBA0A1W2PPF3 345 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 PMS2P5A8MQ11 134 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 J3KRW8 73 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 PITX3O75364 302 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 LINC00869P0C866 280 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 AKAIN1P0CW23 69 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 ANXA7P20073 488 aaKnown RBP6.82□□□□□ -1.32
TRIM28-210ENST00000597618 PLP1P60201 277 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 MRPS10P82664 201 aaKnown RBP6.82□□□□□ -1.32
TRIM28-210ENST00000597618 SLAQ13239 276 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 NEGR1Q7Z3B1 354 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 WFDC10BQ8IUB3 73 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 C11orf72Q8NBR9 251 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 SCGB3A2Q96PL1 93 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 FAM30AQ9NZY2 134 aa6.82□□□□□ -1.32
TRIM28-210ENST00000597618 SMCO3A2RU48 225 aa6.81□□□□□ -1.32
TRIM28-210ENST00000597618 LRCOL1A6NCL2 159 aa6.81□□□□□ -1.32
TRIM28-210ENST00000597618 MRPS12O15235 138 aaKnown RBP6.81□□□□□ -1.32
TRIM28-210ENST00000597618 CRYGDP07320 174 aa6.81□□□□□ -1.32
TRIM28-210ENST00000597618 SLC25A6P12236 298 aa6.81□□□□□ -1.32
TRIM28-210ENST00000597618 VBP1P61758 197 aa6.81□□□□□ -1.32
TRIM28-210ENST00000597618 SELENOTP62341 195 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms