RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 H3BQ15 152 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 PF4P02776 101 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 SNRPCP09234 159 aaKnown RBP7.1□□□□□ -1.27
TRIM28-208ENST00000597172 PYYP10082 97 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 GP9P14770 177 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 BLOC1S1P78537 153 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 FAM90A2PQ658T7 463 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 S100A7AQ86SG5 101 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 SUN5Q8TC36 379 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 LRRC20Q8TCA0 184 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 MARC2Q969Z3 335 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 FXYD5Q96DB9 178 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 MAP1LC3BQ9GZQ8 125 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 OR51M1Q9H341 326 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 SIGLEC8Q9NYZ4 499 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 TMEM14CQ9P0S9 112 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 HERC1Q15751 4861 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 A0A1B0GV50 99 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 A0A1W2PS18 150 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 CXorf1O96002 111 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 ARL14EPLP0DKL9 152 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 GCHFRP30047 84 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 S100A7P31151 101 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 TAS2R45P59539 299 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 DEFB114Q30KQ6 69 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 KHDC3LQ587J8 217 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 CLLU1Q5K131 121 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 BPIFA4PQ86YQ2 179 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 OR8I2Q8N0Y5 310 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 PAXXQ9BUH6 204 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 ZNF586Q9NXT0 402 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 PFDN2Q9UHV9 154 aa7.09□□□□□ -1.27
TRIM28-208ENST00000597172 H3BTX0 84 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 OR7C2O60412 319 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 OR10J4P0C629 311 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 IGLC2P0DOY2 106 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 HIST1H1EP10412 219 aaKnown RBP7.08□□□□□ -1.28
TRIM28-208ENST00000597172 RPL7P18124 248 aaKnown RBP7.08□□□□□ -1.28
TRIM28-208ENST00000597172 SIGLEC15Q6ZMC9 328 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 PQLC2Q6ZP29 291 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 TCF24Q7RTU0 167 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 STXBP6Q8NFX7 210 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 GRAMD2BQ96HH9 432 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 NARS2Q96I59 477 aaKnown RBP7.08□□□□□ -1.28
TRIM28-208ENST00000597172 RCHY1Q96PM5 261 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 HRH4Q9H3N8 390 aa7.08□□□□□ -1.28
TRIM28-208ENST00000597172 UBR4Q5T4S7 5183 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 TRBV19A0A075B6N1 114 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 A0A087X0K7 114 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 NDUFB4O95168 129 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 HBE1P02100 147 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 NBEAP1P0C6P0 100 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 PMS2P11Q13670 270 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 GPR82Q96P67 336 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 TMEM231Q9H6L2 316 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 RNF24Q9Y225 148 aa7.07□□□□□ -1.28
TRIM28-208ENST00000597172 IZUMO1RA6ND01 250 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 HELTA6NFD8 242 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 ZNF785A8K8V0 405 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 TEX46H3BTG2 121 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 SLC17A3O00476 420 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 SAP30O75446 220 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 IGLV1-51P01701 117 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 BMI1P35226 326 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 GALR1P47211 349 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 RAB14P61106 215 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 CD300EQ496F6 205 aaPredicted RBP7.06□□□□□ -1.28
TRIM28-208ENST00000597172 BLNKQ8WV28 456 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 GPR61Q9BZJ8 451 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 MS4A6AQ9H2W1 248 aa7.06□□□□□ -1.28
TRIM28-208ENST00000597172 IGKV3-7A0A075B6H7 116 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 TRAV8-2A0A0B4J237 113 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 FAM74A7A6NL05 159 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 SOCS3O14543 225 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 CD5P06127 495 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 ATF4P18848 351 aaPredicted RBP7.05□□□□□ -1.28
TRIM28-208ENST00000597172 PSMB3P49720 205 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 RANP62826 216 aaKnown RBP7.05□□□□□ -1.28
TRIM28-208ENST00000597172 RPL11P62913 178 aaKnown RBP7.05□□□□□ -1.28
TRIM28-208ENST00000597172 UBE2L3P68036 154 aaKnown RBP7.05□□□□□ -1.28
TRIM28-208ENST00000597172 GUK1Q16774 197 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 IGFL4Q6B9Z1 124 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 IQCF2Q8IXL9 164 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 TMEM61Q8N0U2 210 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 GBGT1Q8N5D6 347 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 DYNLRB2Q8TF09 96 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 DCANP1Q8TF63 244 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 CITED4Q96RK1 184 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 RARRES2Q99969 163 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 TMEM167BQ9NRX6 74 aa7.05□□□□□ -1.28
TRIM28-208ENST00000597172 YTHDF2Q9Y5A9 579 aaKnown RBP7.05□□□□□ -1.28
TRIM28-208ENST00000597172 TRAV25A0A0B4J276 109 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 A0A1W2PRE2 83 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 TSPAN4O14817 238 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 PAGE4O60829 102 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 ZNF253O75346 499 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 HLA-DMBP28068 263 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 UBE2G2P60604 165 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 WFDC3Q8IUB2 231 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms