RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 RNF24Q9Y225 148 aa10.91□□□□□ -0.66
LIG1-214ENST00000597146 HIGD1AQ9Y241 93 aa10.91□□□□□ -0.66
LIG1-214ENST00000597146 C7orf66A4D0T2 115 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 PSMB3P49720 205 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 DEFA1P59665 94 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 DEFA3P59666 94 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 TMEM14EPQ6UXP3 125 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 NIPSNAP3BQ9BS92 247 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 ARL6Q9H0F7 186 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 DKK2Q9UBU2 259 aa10.9□□□□□ -0.66
LIG1-214ENST00000597146 FNDC10F2Z333 226 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 ISLRO14498 428 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 CCNKO75909 580 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 RLN2P04090 185 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 LINC00869P0C866 280 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 TMEM182Q6ZP80 229 aaPredicted RBP10.89□□□□□ -0.67
LIG1-214ENST00000597146 LYPD1Q8N2G4 141 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 GGACTQ9BVM4 153 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 RPRMQ9NS64 109 aa10.89□□□□□ -0.67
LIG1-214ENST00000597146 PMS2P5A8MQ11 134 aa10.88□□□□□ -0.67
LIG1-214ENST00000597146 H3BMM0 161 aa10.88□□□□□ -0.67
LIG1-214ENST00000597146 K7EPK0 472 aa10.88□□□□□ -0.67
LIG1-214ENST00000597146 CST7O76096 145 aa10.88□□□□□ -0.67
LIG1-214ENST00000597146 ZNF705AQ6ZN79 300 aaPredicted RBP10.88□□□□□ -0.67
LIG1-214ENST00000597146 SLC25A32Q9H2D1 315 aa10.88□□□□□ -0.67
LIG1-214ENST00000597146 IGHV3OR16-12A0A075B7B8 117 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 FAM24AA6NFZ4 105 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 ZNF705FA8MVS1 300 aaPredicted RBP10.87□□□□□ -0.67
LIG1-214ENST00000597146 INMT-MINDY4F8WBC2 141 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 ZNF705DP0CH99 300 aaPredicted RBP10.87□□□□□ -0.67
LIG1-214ENST00000597146 ZNF705BP0CI00 300 aaPredicted RBP10.87□□□□□ -0.67
LIG1-214ENST00000597146 RPL7P18124 248 aaKnown RBP10.87□□□□□ -0.67
LIG1-214ENST00000597146 XGP55808 180 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 SLC38A11Q08AI6 406 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 SPATA31B1PQ5VZV4 182 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 FOXI2Q6ZQN5 318 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 ZNF546Q86UE3 836 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 STX12Q86Y82 276 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 FRZBQ92765 325 aa10.87□□□□□ -0.67
LIG1-214ENST00000597146 SLC25A39Q9BZJ4 359 aaPredicted RBP10.87□□□□□ -0.67
LIG1-214ENST00000597146 TMEM189A5PLL7 270 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 AGPAT2O15120 278 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 COX7A2P2O60397 106 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 HLA-DRB4P13762 266 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 FUSP35637 526 aaKnown RBP eCLIP10.86□□□□□ -0.67
LIG1-214ENST00000597146 FXYD7P58549 80 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 HBG1P69891 147 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 HBG2P69892 147 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 PXDC1Q5TGL8 231 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 Q6ZRG5 221 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 NEU1Q99519 415 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 SHANK2-AS3Q9BTD1 123 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 KRTAP1-5Q9BYS1 174 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 SAV1Q9H4B6 383 aaPredicted RBP10.86□□□□□ -0.67
LIG1-214ENST00000597146 PPP1R14DQ9NXH3 145 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 HLA-DRB4X5D2U9 266 aa10.86□□□□□ -0.67
LIG1-214ENST00000597146 PRAF2O60831 178 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 S100A11P31949 105 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 ARL16Q0P5N6 197 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 RAB32Q13637 225 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 C15orf53Q8NAA6 179 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 UQCC1Q9NVA1 299 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 MDFICQ9P1T7 246 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 RFNGQ9Y644 331 aa10.85□□□□□ -0.67
LIG1-214ENST00000597146 TEX48A0A1B0GUV7 120 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 H3BRN7 92 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 J3QL48 77 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 SSNA1O43805 119 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 CAMLGP49069 296 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 DEFB1P60022 68 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 CYCSP99999 105 aaKnown RBP10.84□□□□□ -0.67
LIG1-214ENST00000597146 PSG9Q00887 426 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 OXA1LQ15070 435 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 NRARPQ7Z6K4 114 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 UHRF2Q96PU4 802 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 ARV1Q9H2C2 271 aa10.84□□□□□ -0.67
LIG1-214ENST00000597146 DUSP14O95147 198 aaKnown RBP10.83□□□□□ -0.68
LIG1-214ENST00000597146 SIX6O95475 246 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 SULT1A1P50225 295 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 PLP1P60201 277 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 BAXQ07812 192 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 ATP6V1FQ16864 119 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 GDF5OSQ5U4N7 250 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 FAM78BQ5VT40 261 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 C10orf113Q5VZT2 155 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 IGFL4Q6B9Z1 124 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 LINC00305Q7Z4B0 112 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 ZNF738Q8NE65 137 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 TMEM208Q9BTX3 173 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 SLC25A31Q9H0C2 315 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 DNAJC4Q9NNZ3 241 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 GOLT1BQ9Y3E0 138 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 LINC00588Q9Y4M8 146 aa10.83□□□□□ -0.68
LIG1-214ENST00000597146 YTHDF2Q9Y5A9 579 aaKnown RBP10.83□□□□□ -0.68
LIG1-214ENST00000597146 SMIM9A6NGZ8 99 aa10.82□□□□□ -0.68
LIG1-214ENST00000597146 F6UB75 175 aa10.82□□□□□ -0.68
LIG1-214ENST00000597146 SOCS3O14543 225 aa10.82□□□□□ -0.68
LIG1-214ENST00000597146 RHOBP62745 196 aa10.82□□□□□ -0.68
LIG1-214ENST00000597146 LRRC37A5PQ49AS3 106 aa10.82□□□□□ -0.68
LIG1-214ENST00000597146 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms