RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 SPAG8Q99932 426 aaPredicted RBP8.16□□□□□ -1.1
USE1-204ENST00000594399 MS4A6AQ9H2W1 248 aa8.16□□□□□ -1.1
USE1-204ENST00000594399 HRH4Q9H3N8 390 aa8.16□□□□□ -1.1
USE1-204ENST00000594399 TMEM167BQ9NRX6 74 aa8.16□□□□□ -1.1
USE1-204ENST00000594399 SMAD5-AS1Q9Y6J3 95 aa8.16□□□□□ -1.1
USE1-204ENST00000594399 TRAV2A0A0B4J234 112 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 TRAV1-1A0A0B4J248 108 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 A0A1B0GV50 99 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 IZUMO1RA6ND01 250 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 OR4C46A6NHA9 309 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 H3BQ15 152 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 DNASE2O00115 360 aaPredicted RBP8.15□□□□□ -1.1
USE1-204ENST00000594399 SNRPCP09234 159 aaKnown RBP8.15□□□□□ -1.1
USE1-204ENST00000594399 PDE6HQ13956 83 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 GUCA2BQ16661 112 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 GBGT1Q8N5D6 347 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 BLNKQ8WV28 456 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 ZNF586Q9NXT0 402 aa8.15□□□□□ -1.1
USE1-204ENST00000594399 TRBV19A0A075B6N1 114 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 H3BTX0 84 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 ZNF253O75346 499 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 NBEAP1P0C6P0 100 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 TFPI2P48307 235 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 PSMB3P49720 205 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 SUN5Q8TC36 379 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 DCANP1Q8TF63 244 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 C17orf77Q96MU5 243 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 SLC50A1Q9BRV3 221 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 NOTCH3Q9UM47 2321 aa8.14□□□□□ -1.11
USE1-204ENST00000594399 K7EQG2 157 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 SLC17A3O00476 420 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 ISLRO14498 428 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 SOCS3O14543 225 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 RGS13O14921 159 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 NMBP08949 121 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 PPT1P50897 306 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 RAB14P61106 215 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 OXLD1Q5BKU9 147 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 WFDC3Q8IUB2 231 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 PCNPQ8WW12 178 aaKnown RBP8.13□□□□□ -1.11
USE1-204ENST00000594399 C16orf92Q96LL3 132 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 TMPRSS5Q9H3S3 457 aa8.13□□□□□ -1.11
USE1-204ENST00000594399 ZNF331Q9NQX6 463 aaPredicted RBP8.13□□□□□ -1.11
USE1-204ENST00000594399 NDUFB4O95168 129 aa8.12□□□□□ -1.11
USE1-204ENST00000594399 ID1P41134 155 aa8.12□□□□□ -1.11
USE1-204ENST00000594399 SNRPD3P62318 126 aaKnown RBP8.12□□□□□ -1.11
USE1-204ENST00000594399 PSG9Q00887 426 aa8.12□□□□□ -1.11
USE1-204ENST00000594399 SAMD5Q5TGI4 173 aa8.12□□□□□ -1.11
USE1-204ENST00000594399 MANBALQ9NQG1 85 aa8.12□□□□□ -1.11
USE1-204ENST00000594399 ZMAT5Q9UDW3 170 aaKnown RBP8.12□□□□□ -1.11
USE1-204ENST00000594399 ZNF256Q9Y2P7 627 aaPredicted RBP8.12□□□□□ -1.11
USE1-204ENST00000594399 ARL2-SNX15V9GYD0 113 aa8.12□□□□□ -1.11
USE1-204ENST00000594399 G3V4G9 280 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 IFNA1P01562 189 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 ZNF688P0C7X2 276 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 UBE2G2P60604 165 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 DEFA6Q01524 100 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 BEAN1Q3B7T3 259 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 GTSCR1Q86UQ5 136 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 LYPD1Q8N2G4 141 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 FAM24BQ8N5W8 94 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 LYPD6BQ8NI32 183 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 Q9H3A6 140 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 AAMDCQ9H7C9 122 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 CLEC5AQ9NY25 188 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 GNG13Q9P2W3 67 aa8.11□□□□□ -1.11
USE1-204ENST00000594399 TRAV8-2A0A0B4J237 113 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 A0A1W2PRE2 83 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 GGTLC3B5MD39 225 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 RANP62826 216 aaKnown RBP8.1□□□□□ -1.11
USE1-204ENST00000594399 CCL20P78556 96 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 EGFEM1PQ0D2K5 195 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 ICAM4Q14773 271 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 PSMG4Q5JS54 123 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 CLLU1Q5K131 121 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 EXOC3-AS1Q8N2X6 119 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 RNF182Q8N6D2 247 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 LINC00052Q96N35 136 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 MAP6D1Q9H9H5 199 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 OTORQ9NRC9 128 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 PRELID1Q9Y255 219 aa8.1□□□□□ -1.11
USE1-204ENST00000594399 YTHDF2Q9Y5A9 579 aaKnown RBP8.1□□□□□ -1.11
USE1-204ENST00000594399 FAM74A7A6NL05 159 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 OR11H12B2RN74 326 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 PAGE4O60829 102 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 BCL2P10415 239 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 HLA-DMBP28068 263 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 TAGLN2P37802 199 aaKnown RBP8.09□□□□□ -1.11
USE1-204ENST00000594399 CMC4P56277 68 aaPredicted RBP8.09□□□□□ -1.11
USE1-204ENST00000594399 CD81P60033 236 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 PMS2P11Q13670 270 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 PSG3Q16557 428 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 ODF3L2Q3SX64 289 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 IGFL4Q6B9Z1 124 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 ZNF738Q8NE65 137 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 MRPL53Q96EL3 112 aaKnown RBP8.09□□□□□ -1.11
USE1-204ENST00000594399 C20orf173Q96LM9 149 aa8.09□□□□□ -1.11
USE1-204ENST00000594399 NKX6-2Q9C056 277 aaPredicted RBP8.09□□□□□ -1.11
USE1-204ENST00000594399 PGPA6NDG6 321 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms