RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 NUDT3O95989 172 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 LINC00869P0C866 280 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 CCL18P55774 89 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 RAP2BP61225 183 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 HIST1H1AQ02539 215 aaPredicted RBP8.16□□□□□ -1.1
CLIP3-204ENST00000590559 FGL1Q08830 312 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 TMEM14EPQ6UXP3 125 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 ZNF493Q6ZR52 646 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 CCDC190Q86UF4 302 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 TMEM263Q8WUH6 116 aaKnown RBP8.16□□□□□ -1.1
CLIP3-204ENST00000590559 SMIM8Q96KF7 97 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 LINC01587Q99440 93 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 KRTAP1-5Q9BYS1 174 aa8.16□□□□□ -1.1
CLIP3-204ENST00000590559 TIMM8BQ9Y5J9 83 aaPredicted RBP8.16□□□□□ -1.1
CLIP3-204ENST00000590559 C9orf170A2RU37 121 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 CXCL2P19875 107 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 CDKN1BP46527 198 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 DLK1P80370 383 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 KIR3DS1Q14943 382 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 PYDC2Q56P42 97 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 ZBTB8BQ8NAP8 495 aaPredicted RBP8.15□□□□□ -1.1
CLIP3-204ENST00000590559 ZNF503Q96F45 646 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 C20orf144Q9BQM9 153 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 NPVFQ9HCQ7 196 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 ZNF331Q9NQX6 463 aaPredicted RBP8.15□□□□□ -1.1
CLIP3-204ENST00000590559 PSENENQ9NZ42 101 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 FAT1Q14517 4588 aa8.15□□□□□ -1.1
CLIP3-204ENST00000590559 PRB4P10163 310 aaPredicted RBP8.14□□□□□ -1.11
CLIP3-204ENST00000590559 RHOBP62745 196 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 SSX7Q7RTT5 188 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 MAPKAPK5-AS1Q8N8E1 139 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 RPUSD4Q96CM3 377 aaKnown RBP8.14□□□□□ -1.11
CLIP3-204ENST00000590559 UPK3BQ9BT76 320 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 ARL6Q9H0F7 186 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 ARV1Q9H2C2 271 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 Q9H3A6 140 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 Q9H8V8 135 aa8.14□□□□□ -1.11
CLIP3-204ENST00000590559 NOP10Q9NPE3 64 aaKnown RBP8.14□□□□□ -1.11
CLIP3-204ENST00000590559 SMCO3A2RU48 225 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 H7BYZ3 331 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 SSSCA1O60232 199 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 OR5G3P0C626 314 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 HOXA5P20719 270 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 TAS2R30P59541 319 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 ARL16Q0P5N6 197 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 PXDC1Q5TGL8 231 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 TEPPQ6URK8 271 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 LCN15Q6UWW0 184 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 Q8N1X5 172 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 SAT2Q96F10 170 aaPredicted RBP8.13□□□□□ -1.11
CLIP3-204ENST00000590559 SLC50A1Q9BRV3 221 aa8.13□□□□□ -1.11
CLIP3-204ENST00000590559 PRAC2D3DTV9 90 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 H3BNG1 76 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 ZNF701M0R085 212 aaPredicted RBP8.12□□□□□ -1.11
CLIP3-204ENST00000590559 SLC17A3O00476 420 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 NDUFB6O95139 128 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 METTL15P1P0C7V9 234 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 IGLC2P0DOY2 106 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 BTF3P20290 206 aaKnown RBP8.12□□□□□ -1.11
CLIP3-204ENST00000590559 RRAS2P62070 204 aaPredicted RBP8.12□□□□□ -1.11
CLIP3-204ENST00000590559 SLC38A11Q08AI6 406 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 ESRGQ1W209 222 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 GFI1BQ5VTD9 330 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 MORN5Q5VZ52 161 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 LINC00305Q7Z4B0 112 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 S100A7AQ86SG5 101 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 RXFP4Q8TDU9 374 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 TMEM37Q8WXS4 190 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 SRRQ9GZT4 340 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 FLVCR2Q9UPI3 526 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 RNF24Q9Y225 148 aa8.12□□□□□ -1.11
CLIP3-204ENST00000590559 RCL1Q9Y2P8 373 aaKnown RBP8.12□□□□□ -1.11
CLIP3-204ENST00000590559 TRAV26-1A0A087WT03 109 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 A0A1W2PPQ1 181 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 AGPAT2O15120 278 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 TSC22D2O75157 780 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 OR4E1P0C645 316 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 HTN1P15515 57 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 M6PRP20645 277 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 BTCP35070 178 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 KRTAP10-2P60368 255 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 SPATA12Q7Z6I5 190 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 OR10J6PQ8NGY7 276 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 GNPNAT1Q96EK6 184 aaPredicted RBP8.11□□□□□ -1.11
CLIP3-204ENST00000590559 MGST2Q99735 147 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 GGACTQ9BVM4 153 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 PARD6GQ9BYG4 376 aaPredicted RBP8.11□□□□□ -1.11
CLIP3-204ENST00000590559 PPP1R14DQ9NXH3 145 aa8.11□□□□□ -1.11
CLIP3-204ENST00000590559 C7orf66A4D0T2 115 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 NAP1L6A6NFF2 107 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 H3BQ15 152 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 NOL3O60936 208 aaKnown RBP8.1□□□□□ -1.11
CLIP3-204ENST00000590559 ANXA7P20073 488 aaKnown RBP8.1□□□□□ -1.11
CLIP3-204ENST00000590559 CLINT1Q14677 625 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 BAK1Q16611 211 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 TTC32Q5I0X7 151 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 ZNF546Q86UE3 836 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 BPIFA4PQ86YQ2 179 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 OR10P1Q8NGE3 313 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 LRRC20Q8TCA0 184 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms