RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 RNF141Q8WVD5 230 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 LINC01587Q99440 93 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 C20orf144Q9BQM9 153 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 TIMM8BQ9Y5J9 83 aaPredicted RBP8.29□□□□□ -1.08
LIG3-209ENST00000586435 LRP1BQ9NZR2 4599 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 SMCO3A2RU48 225 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 MRPS12O15235 138 aaKnown RBP8.28□□□□□ -1.08
LIG3-209ENST00000586435 POLR2GP62487 172 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIG3-209ENST00000586435 RHOBP62745 196 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 PYDC2Q56P42 97 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 LINC00612Q8N6U2 182 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 ZNF503Q96F45 646 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 UHRF2Q96PU4 802 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 PPP1R14DQ9NXH3 145 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 PSENENQ9NZ42 101 aa8.28□□□□□ -1.08
LIG3-209ENST00000586435 H7BYZ3 331 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 OR5G3P0C626 314 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 CLINT1Q14677 625 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 TTC32Q5I0X7 151 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 PXDC1Q5TGL8 231 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 LCN15Q6UWW0 184 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 TMEM14EPQ6UXP3 125 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 SSX7Q7RTT5 188 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 MAPKAPK5-AS1Q8N8E1 139 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 OR10J6PQ8NGY7 276 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 LRRC20Q8TCA0 184 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 RPUSD4Q96CM3 377 aaKnown RBP8.27□□□□□ -1.09
LIG3-209ENST00000586435 SMIM8Q96KF7 97 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 SLC50A1Q9BRV3 221 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 ARV1Q9H2C2 271 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 NPVFQ9HCQ7 196 aa8.27□□□□□ -1.09
LIG3-209ENST00000586435 C9orf170A2RU37 121 aa8.26□□□□□ -1.09
LIG3-209ENST00000586435 ADAP1O75689 374 aa8.26□□□□□ -1.09
LIG3-209ENST00000586435 C4orf46Q504U0 113 aa8.26□□□□□ -1.09
LIG3-209ENST00000586435 TEPPQ6URK8 271 aa8.26□□□□□ -1.09
LIG3-209ENST00000586435 PATE2Q6UY27 113 aa8.26□□□□□ -1.09
LIG3-209ENST00000586435 UPK3BQ9BT76 320 aa8.26□□□□□ -1.09
LIG3-209ENST00000586435 ARL6Q9H0F7 186 aa8.26□□□□□ -1.09
LIG3-209ENST00000586435 NOP10Q9NPE3 64 aaKnown RBP8.26□□□□□ -1.09
LIG3-209ENST00000586435 ZNF331Q9NQX6 463 aaPredicted RBP8.26□□□□□ -1.09
LIG3-209ENST00000586435 A0A1W2PPQ1 181 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 H3BNG1 76 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 SSSCA1O60232 199 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 CCNKO75909 580 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 HTN1P15515 57 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 BTF3P20290 206 aaKnown RBP8.25□□□□□ -1.09
LIG3-209ENST00000586435 M6PRP20645 277 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 TAS2R30P59541 319 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 ZNF546Q86UE3 836 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 RXFP4Q8TDU9 374 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 GNPNAT1Q96EK6 184 aaPredicted RBP8.25□□□□□ -1.09
LIG3-209ENST00000586435 Q9H3A6 140 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 Q9H8V8 135 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 MGAT4CQ9UBM8 478 aa8.25□□□□□ -1.09
LIG3-209ENST00000586435 TSC22D2O75157 780 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 NDUFB6O95139 128 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 METTL15P1P0C7V9 234 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 ANXA7P20073 488 aaKnown RBP8.24□□□□□ -1.09
LIG3-209ENST00000586435 S100A5P33763 92 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 RRAS2P62070 204 aaPredicted RBP8.24□□□□□ -1.09
LIG3-209ENST00000586435 SLC38A11Q08AI6 406 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 LINC00305Q7Z4B0 112 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 CCDC190Q86UF4 302 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 BPIFA4PQ86YQ2 179 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 Q8N1X5 172 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 OR10P1Q8NGE3 313 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 GGACTQ9BVM4 153 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 KRTAP1-5Q9BYS1 174 aa8.24□□□□□ -1.09
LIG3-209ENST00000586435 TRAV26-1A0A087WT03 109 aa8.23□□□□□ -1.09
LIG3-209ENST00000586435 NAP1L6A6NFF2 107 aa8.23□□□□□ -1.09
LIG3-209ENST00000586435 ZNF701M0R085 212 aaPredicted RBP8.23□□□□□ -1.09
LIG3-209ENST00000586435 GFI1BQ5VTD9 330 aa8.23□□□□□ -1.09
LIG3-209ENST00000586435 SPATA12Q7Z6I5 190 aa8.23□□□□□ -1.09
LIG3-209ENST00000586435 CCDC28AQ8IWP9 274 aa8.23□□□□□ -1.09
LIG3-209ENST00000586435 ODF3Q96PU9 254 aa8.23□□□□□ -1.09
LIG3-209ENST00000586435 PXMP4Q9Y6I8 212 aa8.23□□□□□ -1.09
LIG3-209ENST00000586435 SLC17A3O00476 420 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 GOSR2O14653 212 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 AGPAT2O15120 278 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 RLN2P04090 185 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 OR4E1P0C645 316 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 IGLC2P0DOY2 106 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 HOXA5P20719 270 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 OR5I1Q13606 314 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 KIR3DS1Q14943 382 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 SRRQ9GZT4 340 aa8.22□□□□□ -1.09
LIG3-209ENST00000586435 RCL1Q9Y2P8 373 aaKnown RBP8.22□□□□□ -1.09
LIG3-209ENST00000586435 MRPS16Q9Y3D3 137 aaKnown RBP8.22□□□□□ -1.09
LIG3-209ENST00000586435 APOBP04114 4563 aaKnown RBP8.21□□□□□ -1.09
LIG3-209ENST00000586435 SNURFLB1AK76 121 aa8.21□□□□□ -1.1
LIG3-209ENST00000586435 PRAC2D3DTV9 90 aa8.21□□□□□ -1.1
LIG3-209ENST00000586435 COX7A2P2O60397 106 aa8.21□□□□□ -1.1
LIG3-209ENST00000586435 PRB4P10163 310 aaPredicted RBP8.21□□□□□ -1.1
LIG3-209ENST00000586435 DAZ2Q13117 558 aaKnown RBP8.21□□□□□ -1.1
LIG3-209ENST00000586435 ESRGQ1W209 222 aa8.21□□□□□ -1.1
LIG3-209ENST00000586435 IAH1Q2TAA2 248 aaPredicted RBP8.21□□□□□ -1.1
LIG3-209ENST00000586435 ZBTB8BQ8NAP8 495 aaPredicted RBP8.21□□□□□ -1.1
LIG3-209ENST00000586435 TMEM37Q8WXS4 190 aa8.21□□□□□ -1.1
LIG3-209ENST00000586435 SAT2Q96F10 170 aaPredicted RBP8.21□□□□□ -1.1
LIG3-209ENST00000586435 C18orf15Q96N68 181 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms