RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 HIST1H2BAQ96A08 127 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 TCEAL7Q9BRU2 100 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 A0A087WWC5 75 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 TRAV34A0A0B4J273 112 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 ZNF320A2RRD8 509 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 ZNF785A8K8V0 405 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 INAFM1C9JVW0 142 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 CRYBA1P05813 215 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 FOSL1P15407 271 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 GNG4P50150 75 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 TAS2R60P59551 318 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 HILS1P60008 231 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 PDE6HQ13956 83 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 C16orf54Q6UWD8 224 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 LINC01551Q86U37 167 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 OCC1Q8TAD7 63 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 UBE2E2Q96LR5 201 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 IGF2BP2-AS1Q96M15 143 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 LINC00479Q96M42 142 aa8.05□□□□□ -1.12
SS18-217ENST00000580958 HIVEP1P15822 2718 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 CUBNO60494 3623 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 IGHV4OR15-8A0A075B7B6 117 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 A0A087WW49 117 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 A0A087X0K7 114 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 TSPAN4O14817 238 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 TCRAP04437 139 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 GALR1P47211 349 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 PSG9Q00887 426 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 C1orf194Q5T5A4 169 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 C18orf65Q6ZTR6 163 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 LYPD1Q8N2G4 141 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 CMTM2Q8TAZ6 248 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 GLMPQ8WWB7 406 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 ISOC2Q96AB3 205 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 GPR82Q96P67 336 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 ATG101Q9BSB4 218 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 LY96Q9Y6Y9 160 aa8.04□□□□□ -1.12
SS18-217ENST00000580958 FLNBO75369 2602 aaKnown RBP8.04□□□□□ -1.12
SS18-217ENST00000580958 NF1P21359 2839 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 NSD1Q96L73 2696 aaPredicted RBP8.03□□□□□ -1.12
SS18-217ENST00000580958 IGHV7-4-1A0A0J9YVY3 117 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 K7EN84 100 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 IGLV2-8P01709 118 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 MT-ND4LP03901 98 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 PRB4P10163 310 aaPredicted RBP8.03□□□□□ -1.12
SS18-217ENST00000580958 UBE2G1P62253 170 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 TMEM183BQ1AE95 376 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 RPEL1Q2QD12 228 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 FAM106AQ4KMX7 169 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 TM4SF20Q53R12 229 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 TCTEX1D4Q5JR98 221 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 KHDC1LQ5JSQ8 128 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 IGFL4Q6B9Z1 124 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 GPHB5Q86YW7 130 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 SGK494Q96LW2 274 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 JMJD8Q96S16 334 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 CTDSP1Q9GZU7 261 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 C16orf95Q9H693 158 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 AAMDCQ9H7C9 122 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 TUBA4BQ9H853 241 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 TMA7Q9Y2S6 64 aaKnown RBP8.03□□□□□ -1.12
SS18-217ENST00000580958 BAHCC1Q9P281 2608 aa8.03□□□□□ -1.12
SS18-217ENST00000580958 FN1P02751 2386 aaKnown RBP8.02□□□□□ -1.13
SS18-217ENST00000580958 COLCA2A8K830 154 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 H7BYZ3 331 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 K7EMT4 169 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 M0R3E3 92 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 ISLRO14498 428 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 ZNF253O75346 499 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 S100A9P06702 114 aaKnown RBP8.02□□□□□ -1.13
SS18-217ENST00000580958 EDN2P20800 178 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 HLA-DMBP28068 263 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 OR5I1Q13606 314 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 HIST2H2BDQ6DRA6 164 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 GOLT1AQ6ZVE7 132 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 C15orf54Q8N8G6 183 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 NHLRC2Q8NBF2 726 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 WIPF2Q8TF74 440 aaPredicted RBP8.02□□□□□ -1.13
SS18-217ENST00000580958 ANAPC16Q96DE5 110 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 GRAMD2BQ96HH9 432 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 PRELID1Q9Y255 219 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 KLF12Q9Y4X4 402 aa8.02□□□□□ -1.13
SS18-217ENST00000580958 A0A1W2PS18 150 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 DIRC3C9JPN6 131 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 MGST1P10620 155 aaKnown RBP8.01□□□□□ -1.13
SS18-217ENST00000580958 CSN1S1P47710 185 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 CDX1P47902 265 aaPredicted RBP8.01□□□□□ -1.13
SS18-217ENST00000580958 DEFB136Q30KP8 78 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 REC114Q7Z4M0 266 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 BAGE2Q86Y30 109 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 OR10G8Q8NGN5 311 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 SFRP2Q96HF1 295 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 FMC1Q96HJ9 113 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 YPEL4Q96NS1 127 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 ZNF331Q9NQX6 463 aaPredicted RBP8.01□□□□□ -1.13
SS18-217ENST00000580958 DAZ1Q9NQZ3 744 aaKnown RBP8.01□□□□□ -1.13
SS18-217ENST00000580958 TMEM242Q9NWH2 141 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 SMPXQ9UHP9 88 aa8.01□□□□□ -1.13
SS18-217ENST00000580958 UFC1Q9Y3C8 167 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 174.3 ms