RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 SMCO4Q9NRQ5 59 aa7.82□□□□□ -1.16
SS18-210ENST00000578700 MRPL27Q9P0M9 148 aaKnown RBP7.82□□□□□ -1.16
SS18-210ENST00000578700 YTHDF2Q9Y5A9 579 aaKnown RBP7.82□□□□□ -1.16
SS18-210ENST00000578700 C7orf77A4D0Y5 90 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 C3orf84H3BNL1 204 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 H3BRN7 92 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 NBEAP1P0C6P0 100 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 PYYP10082 97 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 PPIFP30405 207 aaKnown RBP7.81□□□□□ -1.16
SS18-210ENST00000578700 ARL3P36405 182 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 SUMO1P63165 101 aaKnown RBP7.81□□□□□ -1.16
SS18-210ENST00000578700 FAM90A2PQ658T7 463 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 ATRAIDQ6UW56 229 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 NOL4LQ96MY1 436 aaPredicted RBP7.81□□□□□ -1.16
SS18-210ENST00000578700 C20orf24Q9BUV8 137 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 TENM2Q9NT68 2774 aa7.81□□□□□ -1.16
SS18-210ENST00000578700 F8W735 103 aaPredicted RBP7.8□□□□□ -1.16
SS18-210ENST00000578700 NDUFB4O95168 129 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 MT-ND4LP03901 98 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 HIST1H1EP10412 219 aaKnown RBP7.8□□□□□ -1.16
SS18-210ENST00000578700 RPL7P18124 248 aaKnown RBP7.8□□□□□ -1.16
SS18-210ENST00000578700 ADIRFQ15847 76 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 MORN5Q5VZ52 161 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 TEX38Q6PEX7 206 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 ZNF329Q86UD4 541 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 CMTM2Q8TAZ6 248 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 BLNKQ8WV28 456 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 FXYD5Q96DB9 178 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 ZNF503Q96F45 646 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 GPR82Q96P67 336 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 METTL26Q96S19 204 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 CHRDL1Q9BU40 450 aa7.8□□□□□ -1.16
SS18-210ENST00000578700 CSMD3Q7Z407 3707 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 A0A087WWC5 75 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 HELTA6NFD8 242 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 ZNF98A6NK75 572 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 IGLV1-40P01703 118 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 IGHG4P01861 327 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 GP9P14770 177 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 AKR1C3P42330 323 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 CNN1P51911 297 aaKnown RBP7.79□□□□□ -1.16
SS18-210ENST00000578700 RANP62826 216 aaKnown RBP7.79□□□□□ -1.16
SS18-210ENST00000578700 USF2Q15853 346 aaPredicted RBP7.79□□□□□ -1.16
SS18-210ENST00000578700 LEMD1Q68G75 181 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 TOMM20LQ6UXN7 152 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 C18orf65Q6ZTR6 163 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 C8orf86Q6ZUL3 223 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 OR8I2Q8N0Y5 310 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 HIST1H2BAQ96A08 127 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 C11orf52Q96A22 123 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 CCDC140Q96MF4 163 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 DUX3Q96PT4 197 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 PRR25Q96S07 402 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 MCRIP2Q9BUT9 160 aaKnown RBP7.79□□□□□ -1.16
SS18-210ENST00000578700 CTDSP1Q9GZU7 261 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 SDF2L1Q9HCN8 221 aa7.79□□□□□ -1.16
SS18-210ENST00000578700 SCO2A0A1W2PP80 73 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 CXorf65A6NEN9 183 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 K7EQM0 130 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 TSPAN4O14817 238 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 SLC25A5P05141 298 aaKnown RBP7.78□□□□□ -1.16
SS18-210ENST00000578700 S100A9P06702 114 aaKnown RBP7.78□□□□□ -1.16
SS18-210ENST00000578700 ELANEP08246 267 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 ATF4P18848 351 aaPredicted RBP7.78□□□□□ -1.16
SS18-210ENST00000578700 NPPCP23582 126 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 CRYBB3P26998 211 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 ADMP35318 185 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 GNG4P50150 75 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 UBE2G1P62253 170 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 TMEM88Q6PEY1 159 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 LYPD1Q8N2G4 141 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 GRAMD2BQ96HH9 432 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 AAMDCQ9H7C9 122 aa7.78□□□□□ -1.16
SS18-210ENST00000578700 ZMAT5Q9UDW3 170 aaKnown RBP7.78□□□□□ -1.16
SS18-210ENST00000578700 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.77□□□□□ -1.17
SS18-210ENST00000578700 PGPA6NDG6 321 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 GGTLC3B5MD39 225 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 C9JCJ5 164 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 DNASE2O00115 360 aaPredicted RBP7.77□□□□□ -1.17
SS18-210ENST00000578700 NDUFA4O00483 81 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 PPP1R2P9O14990 202 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 GGCTO75223 188 aaKnown RBP7.77□□□□□ -1.17
SS18-210ENST00000578700 IGHV3-11P01762 117 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 S100PP25815 95 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 RPL35P42766 123 aaKnown RBP7.77□□□□□ -1.17
SS18-210ENST00000578700 GALR1P47211 349 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 MEOX2P50222 304 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 PSG9Q00887 426 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 CFHR3Q02985 330 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 FOXE3Q13461 319 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 PDE6HQ13956 83 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 C1orf194Q5T5A4 169 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 CBLN2Q8IUK8 224 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 C15orf54Q8N8G6 183 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 C5orf17Q8NAS9 161 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 KLHL30-AS1Q8NEE0 82 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 ANAPC16Q96DE5 110 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 OR5B12Q96R08 314 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 TUBA4BQ9H853 241 aa7.77□□□□□ -1.17
SS18-210ENST00000578700 OTORQ9NRC9 128 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms