RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 HOXC5Q00444 222 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 TMEM183BQ1AE95 376 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 RRN3P1Q2M238 152 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 BCL2L15Q5TBC7 163 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 C1orf140Q5VVS0 124 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 GUSBP11Q6P575 273 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 TMEM183AQ8IXX5 376 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 C9orf62Q8N4C0 152 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 C3orf22Q8N5N4 141 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 C11orf42Q8N5U0 333 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.32□□□□□ -2.04
NUP88-209ENST00000574855 OR2T10Q8NGZ9 312 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 OR4A5Q8NH83 315 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 RPS4Y2Q8TD47 263 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 GTSF1Q8WW33 167 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 PP6455Q8WZ26 134 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 H1FXQ92522 213 aaKnown RBP2.32□□□□□ -2.04
NUP88-209ENST00000574855 RNASE6Q93091 150 aaKnown RBP2.32□□□□□ -2.04
NUP88-209ENST00000574855 PLA2G2FQ9BZM2 168 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 RNF122Q9H9V4 155 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 ZNF286AQ9HBT8 521 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 CBLN4Q9NTU7 201 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 LTBP2Q14767 1821 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 DSPPQ9NZW4 1301 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 GBF1Q92538 1859 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 PLXNA4Q9HCM2 1894 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 ZFC3H1O60293 1989 aaKnown RBP2.32□□□□□ -2.04
NUP88-209ENST00000574855 DSCAMO60469 2012 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 PIKFYVEQ9Y2I7 2098 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 IGHV1OR15-9A0A0B4J2B8 117 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 ODAMA1E959 279 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 ZNF860A6NHJ4 632 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 CPSF4LA6NMK7 179 aaKnown RBP2.31□□□□□ -2.04
NUP88-209ENST00000574855 A8MWP6 167 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 C9JCJ5 164 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 INS-IGF2F8WCM5 200 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 H0YGG7 62 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 H0YJW9 148 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 M0R378 163 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 OR2T1O43869 369 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 SNAPC5O75971 98 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 IGHV3-11P01762 117 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 SRP19P09132 144 aaKnown RBP2.31□□□□□ -2.04
NUP88-209ENST00000574855 AKAIN1P0CW23 69 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 CRISP2P16562 243 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 SDC2P34741 201 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 ETV6P41212 452 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 FGF12P61328 243 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 LYZP61626 148 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 ATP5G2Q06055 141 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 BSPH1Q075Z2 132 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 DEFB134Q4QY38 66 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 SCXQ7RTU7 201 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 GKN2Q86XP6 184 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 MORN4Q8NDC4 146 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 OR4S1Q8NGB4 309 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 OR5A2Q8NGI9 324 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 OR5D16Q8NGK9 328 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 C15orf40Q8WUR7 153 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 CAMK2N2Q96S95 79 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 SDF2Q99470 211 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 TMEM133Q9H2Q1 129 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 CKLFQ9UBR5 152 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 ZNF443Q9Y2A4 671 aaPredicted RBP2.31□□□□□ -2.04
NUP88-209ENST00000574855 SOX21Q9Y651 276 aaPredicted RBP2.31□□□□□ -2.04
NUP88-209ENST00000574855 OBSL1O75147 1896 aa2.31□□□□□ -2.04
NUP88-209ENST00000574855 ANKRD12Q6UB98 2062 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 TRBV7-6A0A0J9YX20 115 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 SPTY2D1-AS1A0A0U1RR47 76 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 LINC00862A6NCI5 91 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 I3L521 148 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 SOCS1O15524 211 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 SCO1O75880 301 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 NCR2O95944 276 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 IGLV3-19P01714 112 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 MAS1P04201 325 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 CD7P09564 240 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 PSMB8P28062 276 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 PEBP1P30086 187 aaKnown RBP2.3□□□□□ -2.04
NUP88-209ENST00000574855 CXCL5P42830 114 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 ZNF136P52737 540 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 FOXA3P55318 350 aaPredicted RBP2.3□□□□□ -2.04
NUP88-209ENST00000574855 CMC4P56277 68 aaPredicted RBP2.3□□□□□ -2.04
NUP88-209ENST00000574855 NDUFA6P56556 154 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 RHOGP84095 191 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 MEF2BQ02080 365 aaPredicted RBP2.3□□□□□ -2.04
NUP88-209ENST00000574855 MSMO1Q15800 293 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 PYDC2Q56P42 97 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 MEIG1Q5JSS6 88 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 MORN3Q6PF18 240 aaPredicted RBP2.3□□□□□ -2.04
NUP88-209ENST00000574855 LINC00305Q7Z4B0 112 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 CAMK2N1Q7Z7J9 78 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 ORMDL3Q8N138 153 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 C20orf203Q8NBC4 194 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 OR4K13Q8NH42 304 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 BRK1Q8WUW1 75 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 SLC25A46Q96AG3 418 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 OR4C12Q96R67 309 aa2.3□□□□□ -2.04
NUP88-209ENST00000574855 HDHD3Q9BSH5 251 aaPredicted RBP2.3□□□□□ -2.04
NUP88-209ENST00000574855 TUBA4BQ9H853 241 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms