RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 ERHP84090 104 aaKnown RBP3.11□□□□□ -1.91
VPS35-204ENST00000563884 DAZ2Q13117 558 aaKnown RBP3.11□□□□□ -1.91
VPS35-204ENST00000563884 OR2F1Q13607 317 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 ZNF846Q147U1 533 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 Q499Y3 187 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 CCDC58Q4VC31 144 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 HES5Q5TA89 166 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 RPL22L1Q6P5R6 122 aaKnown RBP3.11□□□□□ -1.91
VPS35-204ENST00000563884 KRTAP5-2Q701N4 177 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 ZNF680Q8NEM1 530 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 OR4D10Q8NGI6 311 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 OR6F1Q8NGZ6 308 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 Q8WTZ3 238 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 BAALCQ8WXS3 180 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 ANP32BQ92688 251 aaKnown RBP3.11□□□□□ -1.91
VPS35-204ENST00000563884 TSC22D3Q99576 134 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 SLC29A1Q99808 456 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 SLC25A31Q9H0C2 315 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 SH3BGRL3Q9H299 93 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 TAS2R8Q9NYW2 309 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 TRAV12-2A0A075B6T6 113 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 TMEM235A6NFC5 223 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 PHOX2AO14813 284 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 EDF1O60869 148 aaKnown RBP3.1□□□□□ -1.91
VPS35-204ENST00000563884 CCNKO75909 580 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 CTXN2P0C2S0 81 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 PSMB9P28065 219 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 SNCAP37840 140 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 CBX5P45973 191 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 HSPA13P48723 471 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 CRYBA4P53673 196 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 SUB1P53999 127 aaKnown RBP eCLIP3.1□□□□□ -1.91
VPS35-204ENST00000563884 PRR3P79522 188 aaKnown RBP3.1□□□□□ -1.91
VPS35-204ENST00000563884 FLOT2Q14254 428 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 INSL4Q14641 139 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 P2RY14Q15391 338 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 MSMO1Q15800 293 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 Q6ZTI0 123 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 OR1S2Q8NGQ3 325 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 OR1B1Q8NGR6 318 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 LGALS14Q8TCE9 139 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 BLNKQ8WV28 456 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 GPR146Q96CH1 333 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 CMTM5Q96DZ9 223 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 PSORS1C1Q9UIG5 152 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 HHLA3Q9XRX5 114 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 FUT9Q9Y231 359 aa3.1□□□□□ -1.91
VPS35-204ENST00000563884 TRAV8-7A0A075B6U6 113 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 TRGV1A0A0A0MS02 117 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 GGTLC3B5MD39 225 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 J3QRE1 110 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 HLA-DQB1P01920 261 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 IL4P05112 153 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 FCGR3AP08637 254 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 CD37P11049 281 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 MAPK3P27361 379 aaPredicted RBP3.09□□□□□ -1.91
VPS35-204ENST00000563884 YPEL3P61236 119 aaPredicted RBP3.09□□□□□ -1.91
VPS35-204ENST00000563884 RHOBP62745 196 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 SUPT4H1P63272 117 aaKnown RBP3.09□□□□□ -1.91
VPS35-204ENST00000563884 PSG3Q16557 428 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 HIGD2BQ4VC39 106 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 OR10J3Q5JRS4 329 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 C1orf194Q5T5A4 169 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 OR8G2PQ6IF36 304 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 Q6ZS49 121 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 CCDC71LQ8N9Z2 235 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 BPIFB6Q8NFQ5 453 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 OR56B1Q8NGI3 324 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 OR4X1Q8NH49 305 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 SMIM19Q96E16 107 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 DPH3Q96FX2 82 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 CYYR1Q96J86 154 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 PGLYRP3Q96LB9 341 aa3.09□□□□□ -1.91
VPS35-204ENST00000563884 GPN1Q9HCN4 374 aaPredicted RBP3.09□□□□□ -1.91
VPS35-204ENST00000563884 SSPOA2VEC9 5147 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 IGLV4-3A0A075B6K6 122 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 A0A075B6Q4 140 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 TRGV4A0A0C4DH28 118 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 PRAF2O60831 178 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 IGHV3-30P01768 117 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 IGHV3-33P01772 117 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 OR5AC1P0C628 307 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 IGHV3-30-3P0DP02 117 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 IGHV3-30-5P0DP03 117 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 TALDO1P37837 337 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 OPRK1P41145 380 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 CLDN12P56749 244 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 RPL19P84098 196 aaKnown RBP3.08□□□□□ -1.92
VPS35-204ENST00000563884 EIF4EBP1Q13541 118 aaPredicted RBP3.08□□□□□ -1.92
VPS35-204ENST00000563884 MEDAGQ5VYS4 303 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 LHFPL3Q86UP9 236 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 OR5H2Q8NGV7 314 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 BORCS5Q969J3 196 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 RAB3CQ96E17 227 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 ARHGAP5-AS1Q96IT6 56 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 C2orf50Q96LR7 162 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 PECRQ9BY49 303 aa3.08□□□□□ -1.92
VPS35-204ENST00000563884 MACF1Q9UPN3 7388 aaKnown RBP3.08□□□□□ -1.92
VPS35-204ENST00000563884 SYNE2Q8WXH0 6885 aaKnown RBP3.08□□□□□ -1.92
VPS35-204ENST00000563884 IGKV2D-24A0A075B6R9 120 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms