RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 NRN1Q9NPD7 142 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 K7EQG2 157 aa12.43□□□□□ -0.42
VPS4A-202ENST00000562754 DCANP1Q8TF63 244 aa12.43□□□□□ -0.42
VPS4A-202ENST00000562754 SAT2Q96F10 170 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-202ENST00000562754 SPAG8Q99932 426 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-202ENST00000562754 GPR61Q9BZJ8 451 aa12.43□□□□□ -0.42
VPS4A-202ENST00000562754 MGAM2Q2M2H8 2515 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 TRBV19A0A075B6N1 114 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 TRAV1-1A0A0B4J248 108 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 NDUFB4O95168 129 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 NBEAP1P0C6P0 100 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 GUCA2BQ16661 112 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 SAMD5Q5TGI4 173 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 WFDC3Q8IUB2 231 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 IQCF2Q8IXL9 164 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 FAM24BQ8N5W8 94 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 SUN5Q8TC36 379 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 BLNKQ8WV28 456 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 ZNF256Q9Y2P7 627 aaPredicted RBP12.42□□□□□ -0.42
VPS4A-202ENST00000562754 SORL1Q92673 2214 aa12.42□□□□□ -0.42
VPS4A-202ENST00000562754 TRAV2A0A0B4J234 112 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 TRAV8-2A0A0B4J237 113 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 G3V4G9 280 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 NMBP08949 121 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 MEOX2P50222 304 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 BLOC1S1P78537 153 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 CCL20P78556 96 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 ZNF767PQ75MW2 155 aa12.41□□□□□ -0.42
VPS4A-202ENST00000562754 DNHD1Q96M86 4753 aa12.4□□□□□ -0.42
VPS4A-202ENST00000562754 DNASE2O00115 360 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-202ENST00000562754 HBE1P02100 147 aa12.4□□□□□ -0.42
VPS4A-202ENST00000562754 GUK1Q16774 197 aa12.4□□□□□ -0.42
VPS4A-202ENST00000562754 IGFL4Q6B9Z1 124 aa12.4□□□□□ -0.42
VPS4A-202ENST00000562754 LRRC20Q8TCA0 184 aa12.4□□□□□ -0.42
VPS4A-202ENST00000562754 ZNF331Q9NQX6 463 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-202ENST00000562754 TMEM167BQ9NRX6 74 aa12.4□□□□□ -0.42
VPS4A-202ENST00000562754 OR4C46A6NHA9 309 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 ZNF253O75346 499 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 HLA-DMBP28068 263 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 PAFAH1B2P68402 229 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 EGFEM1PQ0D2K5 195 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 PDE6HQ13956 83 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 BEAN1Q3B7T3 259 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 LYPD6BQ8NI32 183 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 C16orf92Q96LL3 132 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 C20orf173Q96LM9 149 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 SLC50A1Q9BRV3 221 aa12.39□□□□□ -0.43
VPS4A-202ENST00000562754 ISLRO14498 428 aa12.38□□□□□ -0.43
VPS4A-202ENST00000562754 ZNF688P0C7X2 276 aa12.38□□□□□ -0.43
VPS4A-202ENST00000562754 KRTAP10-11P60412 298 aa12.38□□□□□ -0.43
VPS4A-202ENST00000562754 RNF182Q8N6D2 247 aa12.38□□□□□ -0.43
VPS4A-202ENST00000562754 YTHDF2Q9Y5A9 579 aaKnown RBP12.38□□□□□ -0.43
VPS4A-202ENST00000562754 RGS13O14921 159 aa12.37□□□□□ -0.43
VPS4A-202ENST00000562754 PSMB3P49720 205 aa12.37□□□□□ -0.43
VPS4A-202ENST00000562754 UBE2G2P60604 165 aa12.37□□□□□ -0.43
VPS4A-202ENST00000562754 ODF3L2Q3SX64 289 aa12.37□□□□□ -0.43
VPS4A-202ENST00000562754 SAMD13Q5VXD3 122 aa12.37□□□□□ -0.43
VPS4A-202ENST00000562754 EXOC3-AS1Q8N2X6 119 aa12.37□□□□□ -0.43
VPS4A-202ENST00000562754 Q9H3A6 140 aa12.37□□□□□ -0.43
VPS4A-202ENST00000562754 GGTLC3B5MD39 225 aa12.36□□□□□ -0.43
VPS4A-202ENST00000562754 TEX46H3BTG2 121 aa12.36□□□□□ -0.43
VPS4A-202ENST00000562754 CD7P09564 240 aa12.36□□□□□ -0.43
VPS4A-202ENST00000562754 RANP62826 216 aaKnown RBP12.36□□□□□ -0.43
VPS4A-202ENST00000562754 MAP6D1Q9H9H5 199 aa12.36□□□□□ -0.43
VPS4A-202ENST00000562754 FAM74A7A6NL05 159 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 M0R3E3 92 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 PAGE4O60829 102 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 PRB4P10163 310 aaPredicted RBP12.35□□□□□ -0.43
VPS4A-202ENST00000562754 ID1P41134 155 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 PSG9Q00887 426 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 ICAM4Q14773 271 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 PSMG4Q5JS54 123 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 CLLU1Q5K131 121 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 PRR25Q96S07 402 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 OTORQ9NRC9 128 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 C19orf73Q9NVV2 129 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 GNG13Q9P2W3 67 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 NOTCH1P46531 2555 aa12.35□□□□□ -0.43
VPS4A-202ENST00000562754 A0A1W2PRE2 83 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 DEFB131AP59861 70 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 DEFB1P60022 68 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 CD81P60033 236 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 SNRPD3P62318 126 aaKnown RBP12.34□□□□□ -0.43
VPS4A-202ENST00000562754 PSG3Q16557 428 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 KPRPQ5T749 579 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-202ENST00000562754 LYPD1Q8N2G4 141 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 LINC00052Q96N35 136 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 WFDC10AQ9H1F0 79 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 ARL2-SNX15V9GYD0 113 aa12.34□□□□□ -0.43
VPS4A-202ENST00000562754 ZNF705FA8MVS1 300 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-202ENST00000562754 ATP5G3P48201 142 aa12.33□□□□□ -0.44
VPS4A-202ENST00000562754 PPT1P50897 306 aa12.33□□□□□ -0.44
VPS4A-202ENST00000562754 PMS2P11Q13670 270 aa12.33□□□□□ -0.44
VPS4A-202ENST00000562754 ZNF124Q15973 351 aa12.33□□□□□ -0.44
VPS4A-202ENST00000562754 AAMDCQ9H7C9 122 aa12.33□□□□□ -0.44
VPS4A-202ENST00000562754 MANBALQ9NQG1 85 aa12.33□□□□□ -0.44
VPS4A-202ENST00000562754 NBEAL1Q6ZS30 2694 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 PGPA6NDG6 321 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 PRAC2D3DTV9 90 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 BCL2P10415 239 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms