RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RPL23P62829 140 aaKnown RBP16.29■□□□□ 0.2
CLN3-209ENST00000561689 PNRC1Q12796 327 aaPredicted RBP16.29■□□□□ 0.2
CLN3-209ENST00000561689 C18orf65Q6ZTR6 163 aa16.29■□□□□ 0.2
CLN3-209ENST00000561689 RPH3ALQ9UNE2 315 aa16.29■□□□□ 0.2
CLN3-209ENST00000561689 HELTA6NFD8 242 aa16.28■□□□□ 0.2
CLN3-209ENST00000561689 PEX7O00628 323 aa16.28■□□□□ 0.2
CLN3-209ENST00000561689 OTORQ9NRC9 128 aa16.28■□□□□ 0.2
CLN3-209ENST00000561689 EPDR1Q9UM22 224 aa16.28■□□□□ 0.2
CLN3-209ENST00000561689 RAB5AP20339 215 aa16.27■□□□□ 0.2
CLN3-209ENST00000561689 RPEL1Q2QD12 228 aa16.27■□□□□ 0.2
CLN3-209ENST00000561689 SIGLEC15Q6ZMC9 328 aa16.27■□□□□ 0.2
CLN3-209ENST00000561689 A0A087WWC5 75 aa16.27■□□□□ 0.19
CLN3-209ENST00000561689 TM4SF20Q53R12 229 aa16.27■□□□□ 0.19
CLN3-209ENST00000561689 KHDC1LQ5JSQ8 128 aa16.27■□□□□ 0.19
CLN3-209ENST00000561689 C1orf194Q5T5A4 169 aa16.27■□□□□ 0.19
CLN3-209ENST00000561689 PRB4P10163 310 aaPredicted RBP16.26■□□□□ 0.19
CLN3-209ENST00000561689 RNF212Q495C1 297 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 FAM106AQ4KMX7 169 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 C5orf17Q8NAS9 161 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 LINC01006Q8NI28 216 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 JMJD8Q96S16 334 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 IGHV4OR15-8A0A075B7B6 117 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 A0A087WW49 117 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 TRAV34A0A0B4J273 112 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 ZNF785A8K8V0 405 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 LINC01551Q86U37 167 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 GPHB5Q86YW7 130 aa16.26■□□□□ 0.19
CLN3-209ENST00000561689 FN1P02751 2386 aaKnown RBP16.25■□□□□ 0.19
CLN3-209ENST00000561689 SRSF2Q01130 221 aaKnown RBP16.25■□□□□ 0.19
CLN3-209ENST00000561689 PDE6HQ13956 83 aa16.25■□□□□ 0.19
CLN3-209ENST00000561689 CENPWQ5EE01 88 aa16.25■□□□□ 0.19
CLN3-209ENST00000561689 TCEAL7Q9BRU2 100 aa16.25■□□□□ 0.19
CLN3-209ENST00000561689 C16orf95Q9H693 158 aa16.25■□□□□ 0.19
CLN3-209ENST00000561689 GALR1P47211 349 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 CDX1P47902 265 aaPredicted RBP16.24■□□□□ 0.19
CLN3-209ENST00000561689 DEFB136Q30KP8 78 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 C11orf44Q8N8P7 122 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 OCC1Q8TAD7 63 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 CMTM2Q8TAZ6 248 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 SGK494Q96LW2 274 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 GPR82Q96P67 336 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 DAZ1Q9NQZ3 744 aaKnown RBP16.24■□□□□ 0.19
CLN3-209ENST00000561689 TCRAP04437 139 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 EDN2P20800 178 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 CNN1P51911 297 aaKnown RBP16.24■□□□□ 0.19
CLN3-209ENST00000561689 IGFL4Q6B9Z1 124 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 C16orf54Q6UWD8 224 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 LYPD1Q8N2G4 141 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 WIPF2Q8TF74 440 aaPredicted RBP16.24■□□□□ 0.19
CLN3-209ENST00000561689 ATG101Q9BSB4 218 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 URGCP-MRPS24S4R325 110 aa16.24■□□□□ 0.19
CLN3-209ENST00000561689 SETD2Q9BYW2 2564 aaPredicted RBP16.24■□□□□ 0.19
CLN3-209ENST00000561689 C1orf196B1AJZ1 125 aa16.23■□□□□ 0.19
CLN3-209ENST00000561689 B4DEV8 164 aa16.23■□□□□ 0.19
CLN3-209ENST00000561689 HAX1O00165 279 aa16.23■□□□□ 0.19
CLN3-209ENST00000561689 GNG4P50150 75 aa16.23■□□□□ 0.19
CLN3-209ENST00000561689 RAB5BP61020 215 aa16.23■□□□□ 0.19
CLN3-209ENST00000561689 ELOBQ15370 118 aa16.23■□□□□ 0.19
CLN3-209ENST00000561689 C9JCJ5 164 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 M0R3E3 92 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 ISLRO14498 428 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 CXCL1P09341 107 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 GLMPQ8WWB7 406 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 AAMDCQ9H7C9 122 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 IGHV7-4-1A0A0J9YVY3 117 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 HOXD3P31249 432 aaPredicted RBP16.22■□□□□ 0.19
CLN3-209ENST00000561689 SYNJ2BPP57105 145 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 PSG9Q00887 426 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 SELENOKQ9Y6D0 94 aa16.22■□□□□ 0.19
CLN3-209ENST00000561689 A0A087X0K7 114 aa16.21■□□□□ 0.19
CLN3-209ENST00000561689 TCF21O43680 179 aa16.21■□□□□ 0.19
CLN3-209ENST00000561689 CRLF1O75462 422 aa16.21■□□□□ 0.19
CLN3-209ENST00000561689 C4orf3Q8WVX3 66 aa16.21■□□□□ 0.19
CLN3-209ENST00000561689 IGF2BP2-AS1Q96M15 143 aa16.21■□□□□ 0.19
CLN3-209ENST00000561689 RHPN1-AS1Q9BWJ2 59 aa16.21■□□□□ 0.19
CLN3-209ENST00000561689 BIN3Q9NQY0 253 aa16.21■□□□□ 0.19
CLN3-209ENST00000561689 TGIF2-C20orf24A0A0A6YYL0 155 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 CYSRT1A8MQ03 144 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 K7EN84 100 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 CD28P10747 220 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 GOLT1AQ6ZVE7 132 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 KLHL30-AS1Q8NEE0 82 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 DUX3Q96PT4 197 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 UFC1Q9Y3C8 167 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 A0A1W2PS18 150 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 K7EMT4 169 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 HLA-DMBP28068 263 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 NHLRC2Q8NBF2 726 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 GRAMD2BQ96HH9 432 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 ZNF331Q9NQX6 463 aaPredicted RBP16.2■□□□□ 0.18
CLN3-209ENST00000561689 SMPXQ9UHP9 88 aa16.2■□□□□ 0.18
CLN3-209ENST00000561689 TAS2R60P59551 318 aa16.19■□□□□ 0.18
CLN3-209ENST00000561689 UBE2G1P62253 170 aa16.19■□□□□ 0.18
CLN3-209ENST00000561689 TMEM183BQ1AE95 376 aa16.19■□□□□ 0.18
CLN3-209ENST00000561689 F8P00451 2351 aa16.19■□□□□ 0.18
CLN3-209ENST00000561689 TRAV8-1A0A0A6YYK1 113 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 CXorf65A6NEN9 183 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 CHEK1O14757 476 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 ZNF253O75346 499 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms