RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 F6UZH7 168 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 TGOLN2O43493 480 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 SRP19P09132 144 aaKnown RBP10.58□□□□□ -0.72
LDLR-213ENST00000560502 SPATA31B1PQ5VZV4 182 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 CCDC28AQ8IWP9 274 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 RXFP4Q8TDU9 374 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 FAM167A-AS1Q96KT0 104 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 RARRES2Q99969 163 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 SPATA25Q9BR10 227 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 SLC25A2Q9BXI2 301 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 TMEM14CQ9P0S9 112 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 DOK5Q9P104 306 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.57□□□□□ -0.72
LDLR-213ENST00000560502 A0A1W2PRE2 83 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 H3BRN7 92 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 IL4P05112 153 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 GPR183P32249 361 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 UBE2L3P68036 154 aaKnown RBP10.57□□□□□ -0.72
LDLR-213ENST00000560502 KLF5Q13887 457 aaPredicted RBP10.57□□□□□ -0.72
LDLR-213ENST00000560502 FAM74A3Q4VXF1 159 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 SOHLH1Q5JUK2 328 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 ADAMTSL5Q6ZMM2 481 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 SHANK2-AS3Q9BTD1 123 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 PAXXQ9BUH6 204 aa10.57□□□□□ -0.72
LDLR-213ENST00000560502 SLC25A39Q9BZJ4 359 aaPredicted RBP10.57□□□□□ -0.72
LDLR-213ENST00000560502 C9JQL5 133 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 C11orf94C9JXX5 98 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 PAGE4O60829 102 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 SNAPINO95295 136 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 CLEC3BP05452 202 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 ADCYAP1P18509 176 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 ADMP35318 185 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 ZNF343Q6P1L6 599 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 OR9G4Q8NGQ1 327 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 OR51M1Q9H341 326 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 TMPRSS5Q9H3S3 457 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 RABAC1Q9UI14 185 aa10.56□□□□□ -0.72
LDLR-213ENST00000560502 PLECQ15149 4684 aaKnown RBP10.55□□□□□ -0.72
LDLR-213ENST00000560502 FAM74A7A6NL05 159 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 APOC3P02656 99 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 CD81P60033 236 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 CLEC19AQ6UXS0 136 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 CYB561D1Q8N8Q1 229 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 ZNF503Q96F45 646 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 UHRF2Q96PU4 802 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 CHRDL1Q9BU40 450 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 PUS1Q9Y606 427 aaKnown RBP eCLIP10.55□□□□□ -0.72
LDLR-213ENST00000560502 S4R3C0 116 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 ALMS1Q8TCU4 4167 aa10.55□□□□□ -0.72
LDLR-213ENST00000560502 IGHV3-23P01764 117 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 ARL3P36405 182 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 PNRC1Q12796 327 aaPredicted RBP10.54□□□□□ -0.72
LDLR-213ENST00000560502 MORN5Q5VZ52 161 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 CST9LP1Q5W188 147 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 BPIFA4PQ86YQ2 179 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 C11orf52Q96A22 123 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 RPUSD4Q96CM3 377 aaKnown RBP10.54□□□□□ -0.72
LDLR-213ENST00000560502 FXYD5Q96DB9 178 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 GPR82Q96P67 336 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 ZFAND3Q9H8U3 227 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 SIGLEC8Q9NYZ4 499 aa10.54□□□□□ -0.72
LDLR-213ENST00000560502 NDUFA4O00483 81 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 EIF3GO75821 320 aaKnown RBP eCLIP10.53□□□□□ -0.72
LDLR-213ENST00000560502 TRBV12-3P01733 135 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 CSN3P07498 182 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 HIST1H1EP10412 219 aaKnown RBP10.53□□□□□ -0.72
LDLR-213ENST00000560502 SYNJ2BPP57105 145 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 DEFA5Q01523 94 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 USF2Q15853 346 aaPredicted RBP10.53□□□□□ -0.72
LDLR-213ENST00000560502 C1orf194Q5T5A4 169 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 FAM90A2PQ658T7 463 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 NIPSNAP3BQ9BS92 247 aa10.53□□□□□ -0.72
LDLR-213ENST00000560502 TRAV5A0A0B4J249 113 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 ZNF98A6NK75 572 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 GGCTO75223 188 aaKnown RBP10.52□□□□□ -0.73
LDLR-213ENST00000560502 RPL7P18124 248 aaKnown RBP10.52□□□□□ -0.73
LDLR-213ENST00000560502 UBE2G2P60604 165 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 PDE6HQ13956 83 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 LCN12Q6JVE5 192 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 TOMM20LQ6UXN7 152 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 LINC00322Q6ZN03 302 aaPredicted RBP10.52□□□□□ -0.73
LDLR-213ENST00000560502 LYPD1Q8N2G4 141 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 METTL26Q96S19 204 aa10.52□□□□□ -0.73
LDLR-213ENST00000560502 PEF1Q9UBV8 284 aaKnown RBP10.52□□□□□ -0.73
LDLR-213ENST00000560502 YTHDF2Q9Y5A9 579 aaKnown RBP10.52□□□□□ -0.73
LDLR-213ENST00000560502 IZUMO1RA6ND01 250 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 OR10J4P0C629 311 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 NBEAP1P0C6P0 100 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 ATP5G3P48201 142 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 MEOX2P50222 304 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 RHEBQ15382 184 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 GTSCR1Q86UQ5 136 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 RETNQ9HD89 108 aa10.51□□□□□ -0.73
LDLR-213ENST00000560502 ZNF727A8MUV8 499 aa10.5□□□□□ -0.73
LDLR-213ENST00000560502 B4DEV8 164 aa10.5□□□□□ -0.73
LDLR-213ENST00000560502 ZNF253O75346 499 aa10.5□□□□□ -0.73
LDLR-213ENST00000560502 PYYP10082 97 aa10.5□□□□□ -0.73
LDLR-213ENST00000560502 CRYBB3P26998 211 aa10.5□□□□□ -0.73
LDLR-213ENST00000560502 GUCA2BQ16661 112 aa10.5□□□□□ -0.73
LDLR-213ENST00000560502 CLRN3Q8NCR9 226 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms