RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 C18orf32Q8TCD1 76 aa5.73□□□□□ -1.49
VPS13C-206ENST00000558338 BORCS7Q96B45 105 aa5.73□□□□□ -1.49
VPS13C-206ENST00000558338 NRN1Q9NPD7 142 aa5.73□□□□□ -1.49
VPS13C-206ENST00000558338 C21orf62Q9NYP8 219 aa5.73□□□□□ -1.49
VPS13C-206ENST00000558338 PCNX1Q96RV3 2341 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 MGAQ8IWI9 3026 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 BOD1L1Q8NFC6 3051 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 IGHV2-70DA0A0C4DH43 119 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 SH2D7A6NKC9 451 aaPredicted RBP5.72□□□□□ -1.49
VPS13C-206ENST00000558338 NCBP2LA6PVI3 153 aaKnown RBP5.72□□□□□ -1.49
VPS13C-206ENST00000558338 HSBP1O75506 76 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 RPL7P18124 248 aaKnown RBP5.72□□□□□ -1.49
VPS13C-206ENST00000558338 CSN1S1P47710 185 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 KRTDAPP60985 99 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 Q56UQ5 140 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 SIGLEC15Q6ZMC9 328 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 PRNTQ86SH4 94 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 SIRPDQ9H106 197 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 LPAR2Q9HBW0 351 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 AP5S1Q9NUS5 200 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 X6R8D5 127 aa5.72□□□□□ -1.49
VPS13C-206ENST00000558338 DIRC3C9JPN6 131 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 M0QZK8 103 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 CHEK1O14757 476 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 SNRPCP09234 159 aaKnown RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 CAMPP49913 170 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 RAB9AP51151 201 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 UBE2E1P51965 193 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 SSTP61278 116 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 PMCHL1Q16048 86 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 PSG3Q16557 428 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 LCE1DQ5T752 114 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 ASPHD1Q5U4P2 390 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 EXOC3-AS1Q8N2X6 119 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 CIARTQ8N365 385 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 VN1R17PQ8TDU5 208 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 GLMPQ8WWB7 406 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 CHCHD1Q96BP2 118 aaKnown RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 RCHY1Q96PM5 261 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 ALKBH7Q9BT30 221 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 FAM103A1Q9BTL3 118 aaKnown RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 UBTD1Q9HAC8 227 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 ROS1P08922 2347 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 H3BTX0 84 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 M0R143 59 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 MRPS12O15235 138 aaKnown RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 TOX4O94842 621 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 NDUFB8O95169 186 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 IGLV2-11P01706 119 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 CT45A10P0DMU9 189 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 FOXA3P55318 350 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 RIGQ13278 110 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 KLK9Q2XQG4 91 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 TCF24Q7RTU0 167 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 OR2D3Q8NGH3 330 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 FAM110DQ8TAY7 271 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-206ENST00000558338 ZNF414Q96IQ9 312 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 SGK494Q96LW2 274 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 MIEN1Q9BRT3 115 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 RABAC1Q9UI14 185 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 KLK9Q9UKQ9 250 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 PSG8Q9UQ74 426 aa5.71□□□□□ -1.5
VPS13C-206ENST00000558338 A0A1W2PRD5 423 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 A0A1W2PRF3 423 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 A0A1W2PRM7 423 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 C20orf202A1L168 122 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 M0R2Z0 102 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 CDKN1AP38936 164 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 NDPQ00604 133 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 GDF5OSQ5U4N7 250 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 NIT1Q86X76 327 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 KLHDC1Q8N7A1 406 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 GATD1Q8NB37 220 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 RNASE8Q8TDE3 154 aaKnown RBP5.7□□□□□ -1.5
VPS13C-206ENST00000558338 GTSF1Q8WW33 167 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 PGLYRP4Q96LB8 373 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 PRORYQ9H606 182 aa5.7□□□□□ -1.5
VPS13C-206ENST00000558338 ANKHD1Q8IWZ3 2542 aaKnown RBP5.7□□□□□ -1.5
VPS13C-206ENST00000558338 MAP1BP46821 2468 aaKnown RBP5.69□□□□□ -1.5
VPS13C-206ENST00000558338 TRAV8-1A0A0A6YYK1 113 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 IGHV7-81A0A0B4J1V7 117 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 A0A1B0GUT8 65 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 PLXNB1O43157 2135 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 CIDEAO60543 219 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 NTF3P20783 257 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 CD24P25063 80 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 ZFP36P26651 326 aaKnown RBP5.69□□□□□ -1.5
VPS13C-206ENST00000558338 SAPCD1Q5SSQ6 148 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 RNASEKQ6P5S7 137 aaKnown RBP5.69□□□□□ -1.5
VPS13C-206ENST00000558338 LINC00322Q6ZN03 302 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-206ENST00000558338 Q8N9W7 124 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 ZC2HC1AQ96GY0 325 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 NDFIP1Q9BT67 221 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 PAM16Q9Y3D7 125 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 NBEAQ8NFP9 2946 aa5.69□□□□□ -1.5
VPS13C-206ENST00000558338 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 F8W735 103 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 C3orf79P0CE67 100 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 RPS20P60866 119 aaKnown RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 FBLN7Q53RD9 439 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms